Hyb-Seq for flowering plant systematics

S Dodsworth, L Pokorny, MG Johnson, JT Kim… - Trends in Plant …, 2019 - cell.com
High-throughput DNA sequencing (HTS) presents great opportunities for plant systematics,
yet genomic complexity needs to be reduced for HTS to be effectively applied. We highlight …

Young sex chromosomes in plants and animals

D Charlesworth - New Phytologist, 2019 - Wiley Online Library
A major reason for studying plant sex chromosomes is that they may often be
'young'systems. There is considerable evidence for the independent evolution of separate …

A reference genome for pea provides insight into legume genome evolution

J Kreplak, MA Madoui, P Cápal, P Novák, K Labadie… - Nature …, 2019 - nature.com
We report the first annotated chromosome-level reference genome assembly for pea, Gregor
Mendel's original genetic model. Phylogenetics and paleogenomics show genomic …

Polyploidy, the nucleotype, and novelty: the impact of genome doubling on the biology of the cell

JJ Doyle, JE Coate - International Journal of Plant Sciences, 2019 - journals.uchicago.edu
Polyploidy is a key mechanism of genome evolution and speciation, particularly in plants.
Many aspects of polyploidy have been elucidated with the tools that have become available …

Evolution and diversity of transposable elements in fish genomes

F Shao, M Han, Z Peng - Scientific reports, 2019 - nature.com
Transposable elements (TEs) are genomic sequences that can move, multiply, and often
form sizable fractions of vertebrate genomes. Fish belong to a unique group of vertebrates …

Phylogenomic analysis of UDP‐dependent glycosyltransferases provides insights into the evolutionary landscape of glycosylation in plant metabolism

AE Wilson, L Tian - The Plant Journal, 2019 - Wiley Online Library
Glycosylated metabolites generated by UDP‐dependent glycosyltransferases (UGTs) play
critical roles in plant interactions with the environment as well as human and animal …

Tools and strategies for long-read sequencing and de novo assembly of plant genomes

H Jung, C Winefield, A Bombarely, P Prentis… - Trends in plant …, 2019 - cell.com
The commercial release of third-generation sequencing technologies (TGSTs), giving long
and ultra-long sequencing reads, has stimulated the development of new tools for …

Diversity in genome size and GC content shows adaptive potential in orchids and is closely linked to partial endoreplication, plant life‐history traits and climatic …

P Trávníček, M Čertner, J Ponert, Z Chumová… - New …, 2019 - Wiley Online Library
In angiosperms, genome size and nucleobase composition (GC content) exhibit pronounced
variation with possible adaptive consequences. The hyperdiverse orchid family possessing …

Phylogenetic trends and environmental correlates of nuclear genome size variation in Helianthus sunflowers

F Qiu, EJ Baack, KD Whitney, DG Bock… - New …, 2019 - Wiley Online Library
Flowering plants serve as a powerful model for studying the evolution of nuclear genome
size (GS) given the tremendous GS variation that exists both within and across angiosperm …

Ancient polyploidy and genome evolution in palms

CF Barrett, MR McKain, BT Sinn, XJ Ge… - Genome Biology and …, 2019 - academic.oup.com
Mechanisms of genome evolution are fundamental to our understanding of adaptation and
the generation and maintenance of biodiversity, yet genome dynamics are still poorly …