The nucleosome: from structure to function through physics

AV Onufriev, H Schiessel - Current opinion in structural biology, 2019 - Elsevier
Eukaryotic cells must fit meters of DNA into micron-sized cell nuclei and, at the same time,
control and modulate the access to the genetic material. The necessary amount of DNA …

Linking chromatin composition and structural dynamics at the nucleosome level

GA Armeev, AK Gribkova, I Pospelova… - Current opinion in …, 2019 - Elsevier
Nucleosomes are fundamental units of chromatin compaction, which organize∼ 200 DNA
base pairs using an octamer of histone proteins. Their ubiquitous presence in the cell …

Molecular mechanism of spontaneous nucleosome unraveling

D Winogradoff, A Aksimentiev - Journal of molecular biology, 2019 - Elsevier
Meters of DNA wrap around histone proteins to form nucleosomes and fit inside the micron-
diameter nucleus. For the genetic information encoded in the DNA to become available for …

[HTML][HTML] Histone octamer structure is altered early in ISW2 ATP-dependent nucleosome remodeling

A Hada, SK Hota, J Luo, Y Lin, S Kale, AK Shaytan… - Cell reports, 2019 - cell.com
Nucleosomes are the fundamental building blocks of chromatin that regulate DNA access
and are composed of histone octamers. ATP-dependent chromatin remodelers like ISW2 …

[HTML][HTML] Molecular recognition of nucleosomes by binding partners

S Kale, A Goncearenco, Y Markov, D Landsman… - Current opinion in …, 2019 - Elsevier
Nucleosomes represent the elementary units of chromatin packing and hubs in epigenetic
signaling pathways. Across the chromatin and over the lifetime of the eukaryotic cell …

Unraveling the multiplex folding of nucleosome chains in higher order chromatin

SA Grigoryev, M Schubert - Essays in biochemistry, 2019 - portlandpress.com
The DNA of eukaryotic chromatin and chromosomes is repeatedly supercoiled around
histone octamers forming 'beads-on-a-string'chains of nucleosomes. The extent of …

Free energy profile for unwrapping outer superhelical turn of CENP-A nucleosome

H Kono, S Sakuraba, H Ishida - Biophysics and physicobiology, 2019 - jstage.jst.go.jp
Eukaryotic genome is packaged in a nucleus in the form of chromatin. The fundamental
structural unit of the chromatin is the protein-DNA complex, nucleosome, where DNA of …

[HTML][HTML] Chasing tails: Cathepsin-L improves structural analysis of histones by HX-MS*[S]

M Papanastasiou, J Mullahoo, KC DeRuff… - Molecular & Cellular …, 2019 - ASBMB
The N-terminal regions (tails) of histone proteins are dynamic elements that protrude from
the nucleosome and are involved in many aspects of chromatin organization. Their …

Electrostatics and Solvation: Essential Determinants of Chromatin Compaction

A Bendandi, S Dante, S Rehana Zia, A Diaspro… - bioRxiv, 2019 - biorxiv.org
Chromatin compaction is a process of fundamental importance in Biology, as it greatly
influences cellular function and gene expression. The dynamics of compaction is …

[PDF][PDF] Nucleosomal DNA dynamics mediate Oct4 pioneer factor binding

HV Cojocaru - researchgate.net
Transcription factor (TF) proteins bind to DNA to regulate gene expression. Normally,
accessibility to DNA is required for their function. However, in the nucleus the DNA is often …