New insights into protein–DNA binding specificity from hydrogen bond based comparative study
M Lin, J Guo - Nucleic acids research, 2019 - academic.oup.com
Abstract Knowledge of protein–DNA binding specificity has important implications in
understanding DNA metabolism, transcriptional regulation and developing therapeutic …
understanding DNA metabolism, transcriptional regulation and developing therapeutic …
FeII4L4 Tetrahedron Binds to Nonpaired DNA Bases
J Zhu, CJE Haynes, M Kieffer… - Journal of the …, 2019 - ACS Publications
A water-soluble self-assembled supramolecular FeII4L4 tetrahedron binds to single
stranded DNA, mismatched DNA base pairs, and three-way DNA junctions. Binding of the …
stranded DNA, mismatched DNA base pairs, and three-way DNA junctions. Binding of the …
Discriminating single base pair mismatches in DNA using glutathione-templated copper nanoclusters
A single nucleotide mismatch in a particular sequence of DNA is considered to play pivotal
roles in various central biological processes and is associated with the development of …
roles in various central biological processes and is associated with the development of …
Conformational Selection in Anion Recognition: cGMP-Selective Binding by a Naphthalimide-Functionalized Amido-Amine Macrocycle
AS Oshchepkov, TA Shumilova, M Zerson… - The Journal of …, 2019 - ACS Publications
Amido-amine macrocycles with two and four naphthalimide dyes were designed to bind
nucleoside monophosphates and oligonucleotides in an aqueous buffered solution. Anion …
nucleoside monophosphates and oligonucleotides in an aqueous buffered solution. Anion …
Synthesis of a 3,4-Disubstituted 1,8-Naphthalimide-Based DNA Intercalator for Direct Imaging of Legionella pneumophila
The development of organic molecules to target nucleic acid is an active area of research at
the interface of chemistry and biochemistry, which involves DNA binding, nuclear imaging …
the interface of chemistry and biochemistry, which involves DNA binding, nuclear imaging …
Base-pair mismatch can destabilize small DNA loops through cooperative kinking
J Jeong, HD Kim - Physical review letters, 2019 - APS
Base-pair mismatch can relieve mechanical stress in highly strained DNA molecules, but
how it affects their kinetic stability is not known. Using single-molecule fluorescence …
how it affects their kinetic stability is not known. Using single-molecule fluorescence …
Polymorphic G: G mismatches act as hotspots for inducing right-handed Z DNA by DNA intercalation
DNA mismatches are highly polymorphic and dynamic in nature, albeit poorly characterized
structurally. We utilized the antitumour antibiotic CoII (Chro) 2 (Chro= chromomycin A3) to …
structurally. We utilized the antitumour antibiotic CoII (Chro) 2 (Chro= chromomycin A3) to …
Photodetection of DNA mismatches by dissymmetric Ru (ii) acridine based complexes
M Gillard, B Laramée-Milette, Q Deraedt… - Inorganic Chemistry …, 2019 - pubs.rsc.org
The early detection of DNA mutations such as DNA mismatches is of major interest. Indeed,
the accumulation of mismatches into the genome arises from deficiencies of the cellular …
the accumulation of mismatches into the genome arises from deficiencies of the cellular …
Thioflavin T specifically brightening “Guanine Island” in duplex-DNA: a novel fluorescent probe for single-nucleotide mutation
W Zhou, Z Yu, G Ma, T Jin, Y Li, L Fan, X Li - Analyst, 2019 - pubs.rsc.org
Here, we found that Thioflavin T (ThT) could specifically bind with a G-GGG unit (named as
“Guanine Island”) in double stranded DNA (ds-DNA). Through stacking with G base via …
“Guanine Island”) in double stranded DNA (ds-DNA). Through stacking with G base via …
Development of novel macrocyclic small molecules that target CTG trinucleotide repeats
We describe the molecular design, synthesis, and investigation of a series of acridine-
triaminotriazine macrocycles that selectively bind to CTG trinucleotide repeats in DNA with …
triaminotriazine macrocycles that selectively bind to CTG trinucleotide repeats in DNA with …