A survey on recent advances in named entity recognition from deep learning models

V Yadav, S Bethard - arXiv preprint arXiv:1910.11470, 2019 - arxiv.org
Named Entity Recognition (NER) is a key component in NLP systems for question
answering, information retrieval, relation extraction, etc. NER systems have been studied …

PubTator central: automated concept annotation for biomedical full text articles

CH Wei, A Allot, R Leaman, Z Lu - Nucleic acids research, 2019 - academic.oup.com
Abstract PubTator Central (https://www. ncbi. nlm. nih. gov/research/pubtator/) is a web
service for viewing and retrieving bioconcept annotations in full text biomedical articles …

Collabonet: collaboration of deep neural networks for biomedical named entity recognition

W Yoon, CH So, J Lee, J Kang - BMC bioinformatics, 2019 - Springer
Background Finding biomedical named entities is one of the most essential tasks in
biomedical text mining. Recently, deep learning-based approaches have been applied to …

Biomedical named entity recognition with multilingual BERT

K Hakala, S Pyysalo - Proceedings of the 5th workshop on BioNLP …, 2019 - aclanthology.org
We present the approach of the Turku NLP group to the PharmaCoNER task on Spanish
biomedical named entity recognition. We apply a CRF-based baseline approach and …

A neural named entity recognition and multi-type normalization tool for biomedical text mining

D Kim, J Lee, CH So, H Jeon, M Jeong, Y Choi… - IEEE …, 2019 - ieeexplore.ieee.org
The amount of biomedical literature is vast and growing quickly, and accurate text mining
techniques could help researchers to efficiently extract useful information from the literature …

Pharmaconer: Pharmacological substances, compounds and proteins named entity recognition track

A Gonzalez-Agirre, M Marimon… - Proceedings of The …, 2019 - aclanthology.org
One of the biomedical entity types of relevance for medicine or biosciences are chemical
compounds and drugs. The correct detection these entities is critical for other text mining …

Automatic identification of relevant chemical compounds from patents

SA Akhondi, H Rey, M Schwörer, M Maier, J Toomey… - Database, 2019 - academic.oup.com
In commercial research and development projects, public disclosure of new chemical
compounds often takes place in patents. Only a small proportion of these compounds are …

Overview of the BioCreative VI Precision Medicine Track: mining protein interactions and mutations for precision medicine

R Islamaj Doğan, S Kim, A Chatr-Aryamontri… - Database, 2019 - academic.oup.com
Abstract The Precision Medicine Initiative is a multicenter effort aiming at formulating
personalized treatments leveraging on individual patient data (clinical, genome sequence …

LSTMVoter: chemical named entity recognition using a conglomerate of sequence labeling tools

W Hemati, A Mehler - Journal of cheminformatics, 2019 - Springer
Background Chemical and biomedical named entity recognition (NER) is an essential
preprocessing task in natural language processing. The identification and extraction of …

[PDF][PDF] Text Mining for Bioinformatics Using Biomedical Literature.

A Lamurias, FM Couto - 2019 - core.ac.uk
Biomedical literature has become a rich source of information for various applications.
Automatic text mining methods can make the processing of extracting information from a …