A survey on recent advances in named entity recognition from deep learning models
Named Entity Recognition (NER) is a key component in NLP systems for question
answering, information retrieval, relation extraction, etc. NER systems have been studied …
answering, information retrieval, relation extraction, etc. NER systems have been studied …
PubTator central: automated concept annotation for biomedical full text articles
Abstract PubTator Central (https://www. ncbi. nlm. nih. gov/research/pubtator/) is a web
service for viewing and retrieving bioconcept annotations in full text biomedical articles …
service for viewing and retrieving bioconcept annotations in full text biomedical articles …
Collabonet: collaboration of deep neural networks for biomedical named entity recognition
Background Finding biomedical named entities is one of the most essential tasks in
biomedical text mining. Recently, deep learning-based approaches have been applied to …
biomedical text mining. Recently, deep learning-based approaches have been applied to …
Biomedical named entity recognition with multilingual BERT
We present the approach of the Turku NLP group to the PharmaCoNER task on Spanish
biomedical named entity recognition. We apply a CRF-based baseline approach and …
biomedical named entity recognition. We apply a CRF-based baseline approach and …
A neural named entity recognition and multi-type normalization tool for biomedical text mining
The amount of biomedical literature is vast and growing quickly, and accurate text mining
techniques could help researchers to efficiently extract useful information from the literature …
techniques could help researchers to efficiently extract useful information from the literature …
Pharmaconer: Pharmacological substances, compounds and proteins named entity recognition track
A Gonzalez-Agirre, M Marimon… - Proceedings of The …, 2019 - aclanthology.org
One of the biomedical entity types of relevance for medicine or biosciences are chemical
compounds and drugs. The correct detection these entities is critical for other text mining …
compounds and drugs. The correct detection these entities is critical for other text mining …
Automatic identification of relevant chemical compounds from patents
SA Akhondi, H Rey, M Schwörer, M Maier, J Toomey… - Database, 2019 - academic.oup.com
In commercial research and development projects, public disclosure of new chemical
compounds often takes place in patents. Only a small proportion of these compounds are …
compounds often takes place in patents. Only a small proportion of these compounds are …
Overview of the BioCreative VI Precision Medicine Track: mining protein interactions and mutations for precision medicine
R Islamaj Doğan, S Kim, A Chatr-Aryamontri… - Database, 2019 - academic.oup.com
Abstract The Precision Medicine Initiative is a multicenter effort aiming at formulating
personalized treatments leveraging on individual patient data (clinical, genome sequence …
personalized treatments leveraging on individual patient data (clinical, genome sequence …
LSTMVoter: chemical named entity recognition using a conglomerate of sequence labeling tools
Background Chemical and biomedical named entity recognition (NER) is an essential
preprocessing task in natural language processing. The identification and extraction of …
preprocessing task in natural language processing. The identification and extraction of …
[PDF][PDF] Text Mining for Bioinformatics Using Biomedical Literature.
A Lamurias, FM Couto - 2019 - core.ac.uk
Biomedical literature has become a rich source of information for various applications.
Automatic text mining methods can make the processing of extracting information from a …
Automatic text mining methods can make the processing of extracting information from a …