Recent methodology progress of deep learning for RNA–protein interaction prediction

X Pan, Y Yang, CQ Xia, AH Mirza… - Wiley Interdisciplinary …, 2019 - Wiley Online Library
Interactions between RNAs and proteins play essential roles in many important biological
processes. Benefitting from the advances of next generation sequencing technologies …

RNAct: Protein–RNA interaction predictions for model organisms with supporting experimental data

B Lang, A Armaos, GG Tartaglia - Nucleic acids research, 2019 - academic.oup.com
Protein–RNA interactions are implicated in a number of physiological roles as well as
diseases, with molecular mechanisms ranging from defects in RNA splicing, localization and …

beRBP: binding estimation for human RNA-binding proteins

H Yu, J Wang, Q Sheng, Q Liu, Y Shyr - Nucleic acids research, 2019 - academic.oup.com
Identifying binding targets of RNA-binding proteins (RBPs) can greatly facilitate our
understanding of their functional mechanisms. Most computational methods employ …

The architecture of the human RNA-binding protein regulatory network

A Quattrone, E Dassi - IScience, 2019 - cell.com
RNA-binding proteins (RBPs) are key players of post-transcriptional regulation of gene
expression, relying on competitive and cooperative interactions to fine-tune their action …

Genome-wide dynamics of RNA synthesis, processing and degradation without RNA metabolic labeling

M Furlan, E Galeota, N Del Gaudio, E Dassi, M Caselle… - bioRxiv, 2019 - biorxiv.org
The kinetic rates of RNA synthesis, processing and degradation determine the dynamics of
transcriptional regulation by governing both the abundance and the responsiveness to …

[PDF][PDF] Henry Ford Health System Scholarly Common s

SA Ali, R Gandhi, P Potla, S Keshavarzi… - core.ac.uk
Objective: MicroRNAs act locally and systemically to impact osteoarthritis (OA)
pathophysiology, but comprehensive profiling of the circulating miRNome in early vs late …