Microbial upgrading of acetate into value-added products—examining microbial diversity, bioenergetic constraints and metabolic engineering approaches

R Kutscha, S Pflügl - International journal of molecular sciences, 2020 - mdpi.com
Ecological concerns have recently led to the increasing trend to upgrade carbon contained
in waste streams into valuable chemicals. One of these components is acetate. Its microbial …

New insight into the mechanisms protecting bacteria during desiccation

E Laskowska, D Kuczyńska-Wiśnik - Current genetics, 2020 - Springer
Desiccation is a common stress that bacteria face in the natural environment, and thus, they
have developed a variety of protective mechanisms to mitigate the damage caused by water …

Widespread protein lysine acetylation in gut microbiome and its alterations in patients with Crohn's disease

X Zhang, Z Ning, J Mayne, Y Yang, SA Deeke… - Nature …, 2020 - nature.com
Lysine acetylation (Kac), an abundant post-translational modification (PTM) in prokaryotes,
regulates various microbial metabolic pathways. However, no studies have examined …

Acetylation of translation machinery affected protein translation in E. coli

BQ Zhang, HL Bu, D You, BC Ye - Applied Microbiology and Biotechnology, 2020 - Springer
Reversible lysine acetylation (RLA) of translation machinery components, such as ribosomal
proteins (RPs) and translation factors (TFs), was identified in many microorganisms, while …

Lysine acetylation of the housekeeping sigma factor enhances the activity of the RNA polymerase holoenzyme

JE Kim, JS Choi, JS Kim, YH Cho… - Nucleic Acids …, 2020 - academic.oup.com
Protein lysine acetylation, one of the most abundant post-translational modifications in
eukaryotes, occurs in prokaryotes as well. Despite the evidence of lysine acetylation in …

Bordetella pertussis Acetylome is Shaped by Lysine Deacetylase Bkd1

J Novak, I Fabrik, D Jurnecka, J Holubova… - Journal of proteome …, 2020 - ACS Publications
Post-translational modifications of proteins enable swift physiological adaptation of cells to
altered growth conditions and stress. Aside from protein phosphorylation, acetylation on ε …

pepFunk: a tool for peptide-centric functional analysis of metaproteomic human gut microbiome studies

CMA Simopoulos, Z Ning, X Zhang, L Li… - …, 2020 - academic.oup.com
Motivation Enzymatic digestion of proteins before mass spectrometry analysis is a key
process in metaproteomic workflows. Canonical metaproteomic data processing pipelines …

Structural and Functional Insights into a Lysine Deacylase in the Cyanobacterium Synechococcus sp. PCC 7002

X Liu, M Yang, Y Liu, F Ge, J Zhao - Plant physiology, 2020 - academic.oup.com
Lys deacylases are essential regulators of cell biology in many contexts. Here, we have
identified CddA (cyanobacterial deacetylase/depropionylase), a Lys deacylase enzyme …

Acetate and Potassium Modulate the Stationary-Phase Activation of lrgAB in Streptococcus mutans

SJ Ahn, S Desai, L Blanco, M Lin, KC Rice - Frontiers in Microbiology, 2020 - frontiersin.org
Fluctuating environments force bacteria to constantly adapt and optimize the uptake of
substrates to maintain cellular and nutritional homeostasis. Our recent findings revealed that …

Proteome Wide Profiling of N-ε-Lysine Acetylation Reveals a Novel Mechanism of Regulation of the Chitinase Activity in Francisella novicida

E Marakasova, A Ii, KT Nelson… - Journal of proteome …, 2020 - ACS Publications
Francisella tularensis is a Gram-negative bacterium that causes the zoonotic disease
tularemia. The historical development of tularemia as a biological weapon has led to it being …