Methods and applications of in silico aptamer design and modeling
AA Buglak, AV Samokhvalov, AV Zherdev… - International Journal of …, 2020 - mdpi.com
Aptamers are nucleic acid analogues of antibodies with high affinity to different targets, such
as cells, viruses, proteins, inorganic materials, and coenzymes. Empirical approaches allow …
as cells, viruses, proteins, inorganic materials, and coenzymes. Empirical approaches allow …
The HDOCK server for integrated protein–protein docking
Abstract The HDOCK server (http://hdock. phys. hust. edu. cn/) is a highly integrated suite of
homology search, template-based modeling, structure prediction, macromolecular docking …
homology search, template-based modeling, structure prediction, macromolecular docking …
COVID-19 spike-host cell receptor GRP78 binding site prediction
Objectives Understanding the novel coronavirus (COVID-19) mode of host cell recognition
may help to fight the disease and save lives. The spike protein of coronaviruses is the main …
may help to fight the disease and save lives. The spike protein of coronaviruses is the main …
[HTML][HTML] Epitope-based chimeric peptide vaccine design against S, M and E proteins of SARS-CoV-2, the etiologic agent of COVID-19 pandemic: an in silico approach
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is the etiologic agent of the
ongoing pandemic of coronavirus disease 2019 (COVID-19), a public health emergency of …
ongoing pandemic of coronavirus disease 2019 (COVID-19), a public health emergency of …
[PDF][PDF] Performance and its limits in rigid body protein-protein docking
The development of fast Fourier transform (FFT) algorithms enabled the sampling of billions
of complex conformations and thus revolutionized protein-protein docking. FFT-based …
of complex conformations and thus revolutionized protein-protein docking. FFT-based …
Marine toxins targeting Kv1 channels: Pharmacological tools and therapeutic scaffolds
Toxins from marine animals provide molecular tools for the study of many ion channels,
including mammalian voltage-gated potassium channels of the Kv1 family. Selectivity …
including mammalian voltage-gated potassium channels of the Kv1 family. Selectivity …
Designing of a next generation multiepitope based vaccine (MEV) against SARS-COV-2: Immunoinformatics and in silico approaches
Coronavirus disease 2019 (COVID-19) pandemic caused by severe acute respiratory
coronavirus 2 (SARS-COV-2) is a significant threat to global health security. Till date, no …
coronavirus 2 (SARS-COV-2) is a significant threat to global health security. Till date, no …
Noncanonical binding of Lck to CD3ε promotes TCR signaling and CAR function
FA Hartl, E Beck-Garcìa, NM Woessner… - Nature …, 2020 - nature.com
Initiation of T cell antigen receptor (TCR) signaling involves phosphorylation of CD3
cytoplasmic tails by the tyrosine kinase Lck. How Lck is recruited to the TCR to initiate …
cytoplasmic tails by the tyrosine kinase Lck. How Lck is recruited to the TCR to initiate …
[PDF][PDF] Modeling antibody-antigen complexes by information-driven docking
Antibodies are Y-shaped proteins essential for immune response. Their capability to
recognize antigens with high specificity makes them excellent therapeutic targets …
recognize antigens with high specificity makes them excellent therapeutic targets …
[HTML][HTML] Non-synonymous mutations of SARS-CoV-2 leads epitope loss and segregates its variants
The non-synonymous mutations of SARS-CoV-2 isolated from across the world have been
identified during the last few months. The surface glycoprotein spike of SARS-CoV-2 forms …
identified during the last few months. The surface glycoprotein spike of SARS-CoV-2 forms …