How machine learning will transform biomedicine
This Perspective explores the application of machine learning toward improved diagnosis
and treatment. We outline a vision for how machine learning can transform three broad …
and treatment. We outline a vision for how machine learning can transform three broad …
[HTML][HTML] Limitations and challenges in protein stability prediction upon genome variations: towards future applications in precision medicine
Protein stability predictions are becoming essential in medicine to develop novel
immunotherapeutic agents and for drug discovery. Despite the large number of …
immunotherapeutic agents and for drug discovery. Despite the large number of …
Protein storytelling through physics
BACKGROUND Understanding biology, particularly at the level of actionable drug
discovery, is often a matter of developing accurate stories about how proteins work. This …
discovery, is often a matter of developing accurate stories about how proteins work. This …
Rhapsody: predicting the pathogenicity of human missense variants
Motivation The biological effects of human missense variants have been studied
experimentally for decades but predicting their effects in clinical molecular diagnostics …
experimentally for decades but predicting their effects in clinical molecular diagnostics …
Rheostat positions: A new classification of protein positions relevant to pharmacogenomics
AW Fenton, BM Page, A Spellman-Kruse… - Medicinal Chemistry …, 2020 - Springer
To achieve the full potential of pharmacogenomics, one must accurately predict the
functional outcomes that arise from amino acid substitutions in proteins. Classically …
functional outcomes that arise from amino acid substitutions in proteins. Classically …
Towards accurate genotype–phenotype correlations in the CYP2D6 gene
AL Pey - Journal of Personalized Medicine, 2020 - mdpi.com
Establishing accurate and large-scale genotype–phenotype correlations and predictions of
individual response to pharmacological treatments are two of the holy grails of Personalized …
individual response to pharmacological treatments are two of the holy grails of Personalized …
“Multiplex” rheostat positions cluster around allosterically critical regions of the lactose repressor protein
LE Bantis, DJ Parente, AW Fenton, L Swint-Kruse - BioRxiv, 2020 - biorxiv.org
Amino acid variation at “rheostat” positions provides opportunity to modulate various aspects
of protein function–such as binding affinity or allosteric coupling–across a wide range …
of protein function–such as binding affinity or allosteric coupling–across a wide range …
Background splicing and genetic disease
D Alexieva, Y Long, R Sarkar, H Dhayan, E Bruet… - 2020 - researchsquare.com
We report that low level background splicing by normal genes can be used to predict the
likely effect of splicing mutations upon cryptic splice site activation and exon skipping, with …
likely effect of splicing mutations upon cryptic splice site activation and exon skipping, with …
Towards Accurate Genotype–Phenotype Correlations in the CYP2D6 Gene
ÁL Pey Rodríguez - 2020 - digibug.ugr.es
Establishing accurate and large-scale genotype–phenotype correlations and predictions of
individual response to pharmacological treatments are two of the holy grails of Personalized …
individual response to pharmacological treatments are two of the holy grails of Personalized …