[HTML][HTML] Inference of past demography, dormancy and self-fertilization rates from whole genome sequence data
Several methods based on the Sequential Markovian coalescence (SMC) have been
developed that make use of genome sequence data to uncover population demographic …
developed that make use of genome sequence data to uncover population demographic …
The seed bank coalescent with simultaneous switching
J Blath, A González Casanova, N Kurt… - 2020 - projecteuclid.org
We introduce a new Wright-Fisher type model for seed banks incorporating “simultaneous
switching”, which is motivated by recent work on microbial dormancy ([21],[28]). We show …
switching”, which is motivated by recent work on microbial dormancy ([21],[28]). We show …
Statistical tools for seed bank detection
J Blath, E Buzzoni, J Koskela, MW Berenguer - Theoretical Population …, 2020 - Elsevier
We derive statistical tools to analyze the patterns of genetic variability produced by models
related to seed banks; in particular the Kingman coalescent, its time-changed counterpart …
related to seed banks; in particular the Kingman coalescent, its time-changed counterpart …
The shape of a seed bank tree
AG Casanova, L Peñaloza, A Siri-Jégousse - arXiv preprint arXiv …, 2020 - arxiv.org
We derive the asymptotic behavior of the total, active and inactive branch lengths of the seed
bank coalescent, when the size of the initial sample grows to infinity. Those random …
bank coalescent, when the size of the initial sample grows to infinity. Those random …