Comprehensive analysis of structural variants in breast cancer genomes using single-molecule sequencing

S Aganezov, S Goodwin, RM Sherman… - Genome …, 2020 - genome.cshlp.org
Improved identification of structural variants (SVs) in cancer can lead to more targeted and
effective treatment options as well as advance our basic understanding of the disease and …

Suicide and suicide behaviors: A review of transcriptomics and multiomics studies in psychiatric disorders

Y Zhou, P Lutz, EC Ibrahim, P Courtet… - Journal of …, 2020 - Wiley Online Library
Aberrant gene expression can contribute to brain and nervous system dysfunction that
causes many psychiatric illnesses. Here, we review how transcriptomic approaches have …

Pan‐cancer RNA‐seq data stratifies tumours by some hallmarks of cancer

FG Frost, PF Cherukuri, S Milanovich… - Journal of Cellular …, 2020 - Wiley Online Library
Numerous genetic and epigenetic alterations cause functional changes in cell biology
underlying cancer. These hallmark functional changes constitute potentially tissue …

[HTML][HTML] Multi-tissue epigenetic analysis of the osteoarthritis susceptibility locus mapping to the plectin gene PLEC

AK Sorial, IMJ Hofer, M Tselepi, K Cheung… - Osteoarthritis and …, 2020 - Elsevier
Objective In cartilage, the osteoarthritis (OA) associated single nucleotide polymorphism
(SNP) rs11780978 correlates with differential expression of PLEC, and with differential …

Detection of haplotype-dependent allele-specific DNA methylation in WGBS data

J Abante, Y Fang, AP Feinberg, J Goutsias - Nature communications, 2020 - nature.com
In heterozygous genomes, allele-specific measurements can reveal biologically significant
differences in DNA methylation between homologous alleles associated with local changes …

Identification of transcription factors controlling floral morphology in wild Petunia species with contrasting pollination syndromes

T Yarahmadov, S Robinson, M Hanemian… - The Plant …, 2020 - Wiley Online Library
Adaptation to different pollinators is an important driver of speciation in the angiosperms.
Genetic approaches such as QTL mapping have been successfully used to identify the …

Transcript specific regulation of expression influences susceptibility to multiple sclerosis

M Ban, W Liao, A Baker, A Compston… - European Journal of …, 2020 - nature.com
Genome-wide association studies (GWAS) have identified over 100 loci containing single
nucleotide variants (SNVs) that influence the risk of developing multiple sclerosis (MS). Most …

Contributions of cis- and trans-Regulatory Evolution to Transcriptomic Divergence across Populations in the Drosophila mojavensis Larval Brain

KM Benowitz, JM Coleman, CW Allan… - Genome Biology and …, 2020 - academic.oup.com
Natural selection on gene expression was originally predicted to result primarily in cis-rather
than trans-regulatory evolution, due to the expectation of reduced pleiotropy. Despite this …

[HTML][HTML] Tumor suppressor genes and allele-specific expression: mechanisms and significance

EA Clayton, S Khalid, D Ban, L Wang, IK Jordan… - Oncotarget, 2020 - ncbi.nlm.nih.gov
Recent findings indicate that allele-specific expression (ASE) at specific cancer driver gene
loci may be of importance in onset/progression of the disease. Of particular interest are loss …

Genome-wide analysis of spatiotemporal allele-specific expression in F1 hybrids of meat-and egg-type chickens

P Ren, F Deng, Y Wang, J Ran, J Li, L Yin, X Liu… - Gene, 2020 - Elsevier
In diploid organisms, each gene locus is composed of two parental alleles, which would
interact with each other for determining the phenotypic variation. Better understanding of the …