[HTML][HTML] From genotypes to organisms: State-of-the-art and perspectives of a cornerstone in evolutionary dynamics

S Manrubia, JA Cuesta, J Aguirre, SE Ahnert… - Physics of Life …, 2021 - Elsevier
Understanding how genotypes map onto phenotypes, fitness, and eventually organisms is
arguably the next major missing piece in a fully predictive theory of evolution. We refer to this …

The genotype‐phenotype landscape of an allosteric protein

DS Tack, PD Tonner, A Pressman… - Molecular systems …, 2021 - embopress.org
Allostery is a fundamental biophysical mechanism that underlies cellular sensing, signaling,
and metabolism. Yet a quantitative understanding of allosteric genotype‐phenotype …

Encapsulation of ribozymes inside model protocells leads to faster evolutionary adaptation

YC Lai, Z Liu, IA Chen - Proceedings of the National …, 2021 - National Acad Sciences
Functional biomolecules, such as RNA, encapsulated inside a protocellular membrane are
believed to have comprised a very early, critical stage in the evolution of life, since …

Patterns and causes of signed linkage disequilibria in flies and plants

G Sandler, SI Wright, AF Agrawal - Molecular Biology and …, 2021 - academic.oup.com
Most empirical studies of linkage disequilibrium (LD) study its magnitude, ignoring its sign.
Here, we examine patterns of signed LD in two population genomic data sets, one from …

Brassinosteroids synthesised by CYP85A/A1 but not CYP85A2 function via a BRI1-like receptor but not via BRI1 in Picea abies

L Wang, J Liu, Y Shen, R Pu, M Hou… - Journal of …, 2021 - academic.oup.com
Brassinosteroids (BRs) are essential plant hormones. In angiosperms, brassinolide and
castasterone, the first and second most active BRs, respectively, are synthesised by …

Learning epistatic gene interactions from perturbation screens

K Elmes, F Schmich, E Szczurek, J Jenkins… - Plos one, 2021 - journals.plos.org
The treatment of complex diseases often relies on combinatorial therapy, a strategy where
drugs are used to target multiple genes simultaneously. Promising candidate genes for …

[PDF][PDF] Can we distinguish modes of selective interactions using linkage disequilibrium

AP Ragsdale - bioRxiv, 2021 - scholar.archive.org
Selected mutations interfere and interact with evolutionary processes at nearby loci,
distorting allele frequency trajectories and correlations between pairs of mutations. A …

Quantifying the evolutionary constraints and potential of hepatitis c virus ns5a protein

L Dai, Y Du, H Qi, CD Huber, D Chen, TH Zhang… - Msystems, 2021 - Am Soc Microbiol
ABSTRACT RNA viruses, such as hepatitis C virus (HCV), influenza virus, and SARS-CoV-2,
are notorious for their ability to evolve rapidly under selection in novel environments. It is …

Fitness landscape of a dynamic RNA structure

VWC Soo, JB Swadling, AJ Faure, T Warnecke - PLoS genetics, 2021 - journals.plos.org
RNA structures are dynamic. As a consequence, mutational effects can be hard to
rationalize with reference to a single static native structure. We reasoned that deep …

Mastering the control of the Rho transcription factor for biotechnological applications

TG Villa, AG Abril, A Sánchez-Pérez - Applied Microbiology and …, 2021 - Springer
The present review represents an update on the fundamental role played by the Rho factor,
which facilitates the process of Rho-dependent transcription termination in the prokaryotic …