E2edna: Simulation protocol for dna aptamers with ligands

M Kilgour, T Liu, BD Walker, P Ren… - Journal of chemical …, 2021 - ACS Publications
We present E2EDNA, a simulation protocol and accompanying code for the molecular
biophysics and materials science communities. This protocol is both easy to use and …

Experimental and computational methods for guiding identification and characterization of epitranscriptome proteins

MR Burroughs, JC Gonzalez-Rivera, A Cordova… - Epitranscriptomics, 2021 - Springer
Modifications to the four canonical RNA nucleotides decorate cellular RNAs, forming what is
collectively known as the epitranscriptome. A few of the well-studied RNA modifications (eg …