[HTML][HTML] Tau post-translational modifications: dynamic transformers of tau function, degradation, and aggregation

C Alquezar, S Arya, AW Kao - Frontiers in neurology, 2021 - frontiersin.org
Post-translational modifications (PTMs) on tau have long been recognized as affecting
protein function and contributing to neurodegeneration. The explosion of information on …

[HTML][HTML] Insulin signal transduction perturbations in insulin resistance

M Khalid, J Alkaabi, MAB Khan, A Adem - International journal of …, 2021 - mdpi.com
Type 2 diabetes mellitus is a widespread medical condition, characterized by high blood
glucose and inadequate insulin action, which leads to insulin resistance. Insulin resistance …

Widening the bottleneck of phosphoproteomics: evolving strategies for phosphopeptide enrichment

TY Low, MA Mohtar, PY Lee, N Omar… - Mass spectrometry …, 2021 - Wiley Online Library
Phosphorylation is a form of protein posttranslational modification (PTM) that regulates many
biological processes. Whereas phosphoproteomics is a scientific discipline that identifies …

[HTML][HTML] PhosR enables processing and functional analysis of phosphoproteomic data

HJ Kim, T Kim, NJ Hoffman, D Xiao, DE James… - Cell reports, 2021 - cell.com
Mass spectrometry (MS)-based phosphoproteomics has revolutionized our ability to profile
phosphorylation-based signaling in cells and tissues on a global scale. To infer the action of …

[HTML][HTML] Akt phosphorylates insulin receptor substrate to limit PI3K-mediated PIP3 synthesis

AL Kearney, DM Norris, M Ghomlaghi, M Kin Lok Wong… - Elife, 2021 - elifesciences.org
The phosphoinositide 3-kinase (PI3K)-Akt network is tightly controlled by feedback
mechanisms that regulate signal flow and ensure signal fidelity. A rapid overshoot in insulin …

[HTML][HTML] Protein phosphorylation in cancer: role of nitric oxide signaling pathway

X Liu, Y Zhang, Y Wang, M Yang, F Hong, S Yang - Biomolecules, 2021 - mdpi.com
Nitric oxide (NO), a free radical, plays a critical role in a wide range of physiological and
pathological processes. Due to its pleiotropic function, it has been widely investigated in …

Optimization of serine phosphorylation prediction in proteins by comparing human engineered features and deep representations

S Naseer, W Hussain, YD Khan, N Rasool - Analytical Biochemistry, 2021 - Elsevier
Deep representations can be used to replace human-engineered representations, as such
features are constrained by certain limitations. For the prediction of protein post-translation …

EPSD: a well-annotated data resource of protein phosphorylation sites in eukaryotes

S Lin, C Wang, J Zhou, Y Shi, C Ruan… - Briefings in …, 2021 - academic.oup.com
As an important post-translational modification (PTM), protein phosphorylation is involved in
the regulation of almost all of biological processes in eukaryotes. Due to the rapid progress …

Phosphoproteomics: a valuable tool for uncovering molecular signaling in cancer cells

JS Gerritsen, FM White - Expert review of proteomics, 2021 - Taylor & Francis
Introduction Many pathologies, including cancer, have been associated with aberrant
phosphorylation-mediated signaling networks that drive altered cell proliferation, migration …

[HTML][HTML] Phosphorylation regulates cullin-based ubiquitination in tumorigenesis

Y Chen, X Shao, J Cao, H Zhu, B Yang, Q He… - … Pharmaceutica Sinica B, 2021 - Elsevier
Cullin-RING ligases (CRLs) recognize and interact with substrates for ubiquitination and
degradation, and can be targeted for disease treatment when the abnormal expression of …