Artificial intelligence in cancer research, diagnosis and therapy
Artificial intelligence and machine learning techniques are breaking into biomedical
research and health care, which importantly includes cancer research and oncology, where …
research and health care, which importantly includes cancer research and oncology, where …
Machine learning for deciphering cell heterogeneity and gene regulation
Epigenetics studies inheritable and reversible modifications of DNA that allow cells to
control gene expression throughout their development and in response to environmental …
control gene expression throughout their development and in response to environmental …
A RUNX–CBFβ-driven enhancer directs the Irf8 dose-dependent lineage choice between DCs and monocytes
K Murakami, H Sasaki, A Nishiyama, D Kurotaki… - Nature …, 2021 - nature.com
The transcription factor IRF8 is essential for the development of monocytes and dendritic
cells (DCs), whereas it inhibits neutrophilic differentiation. It is unclear how Irf8 expression is …
cells (DCs), whereas it inhibits neutrophilic differentiation. It is unclear how Irf8 expression is …
Pancreatic cancer prognosis is predicted by an ATAC-array technology for assessing chromatin accessibility
S Dhara, S Chhangawala, H Chintalapudi… - Nature …, 2021 - nature.com
Unlike other malignancies, therapeutic options in pancreatic ductal adenocarcinoma
(PDAC) are largely limited to cytotoxic chemotherapy without the benefit of molecular …
(PDAC) are largely limited to cytotoxic chemotherapy without the benefit of molecular …
Role of enhancers in development and diseases
SS Maurya - Epigenomes, 2021 - mdpi.com
Enhancers are cis-regulatory elements containing short DNA sequences that serve as
binding sites for pioneer/regulatory transcription factors, thus orchestrating the regulation of …
binding sites for pioneer/regulatory transcription factors, thus orchestrating the regulation of …
Dynamic plasticity within the EMT spectrum, rather than static mesenchymal traits, drives tumor heterogeneity and metastatic progression of breast cancers
Abstract The Epithelial-to-Mesenchymal Transition (EMT) is a developmental cellular
program frequently coopted by cancer cells and is a key contributor to both heterogeneity in …
program frequently coopted by cancer cells and is a key contributor to both heterogeneity in …
Discrete regulatory modules instruct hematopoietic lineage commitment and differentiation
G Georgolopoulos, N Psatha, M Iwata… - Nature …, 2021 - nature.com
Lineage commitment and differentiation is driven by the concerted action of master
transcriptional regulators at their target chromatin sites. Multiple efforts have characterized …
transcriptional regulators at their target chromatin sites. Multiple efforts have characterized …
Integrative analysis of epigenetics data identifies gene-specific regulatory elements
Understanding how epigenetic variation in non-coding regions is involved in distal gene-
expression regulation is an important problem. Regulatory regions can be associated to …
expression regulation is an important problem. Regulatory regions can be associated to …
Deregulation of enhancer structure, function, and dynamics in acute lymphoblastic leukemia
Enhancers control dynamic changes in gene expression and orchestrate the tightly
controlled transcriptional circuitries that direct and coordinate cell growth, proliferation …
controlled transcriptional circuitries that direct and coordinate cell growth, proliferation …
Pancreatic cancer prognosis is predicted by a novel ATAC-array technology for assessing chromatin accessibility
We investigated tumor-cell-intrinsic chromatin accessibility patterns of pancreatic ductal
adenocarcinoma (PDAC) by ATAC-seq on EpCAM+ PDAC malignant epithelial cells, sorted …
adenocarcinoma (PDAC) by ATAC-seq on EpCAM+ PDAC malignant epithelial cells, sorted …