Artificial intelligence in cancer research, diagnosis and therapy

O Elemento, C Leslie, J Lundin, G Tourassi - Nature Reviews Cancer, 2021 - nature.com
Artificial intelligence and machine learning techniques are breaking into biomedical
research and health care, which importantly includes cancer research and oncology, where …

Machine learning for deciphering cell heterogeneity and gene regulation

M Scherer, F Schmidt, O Lazareva, J Walter… - Nature Computational …, 2021 - nature.com
Epigenetics studies inheritable and reversible modifications of DNA that allow cells to
control gene expression throughout their development and in response to environmental …

A RUNX–CBFβ-driven enhancer directs the Irf8 dose-dependent lineage choice between DCs and monocytes

K Murakami, H Sasaki, A Nishiyama, D Kurotaki… - Nature …, 2021 - nature.com
The transcription factor IRF8 is essential for the development of monocytes and dendritic
cells (DCs), whereas it inhibits neutrophilic differentiation. It is unclear how Irf8 expression is …

Pancreatic cancer prognosis is predicted by an ATAC-array technology for assessing chromatin accessibility

S Dhara, S Chhangawala, H Chintalapudi… - Nature …, 2021 - nature.com
Unlike other malignancies, therapeutic options in pancreatic ductal adenocarcinoma
(PDAC) are largely limited to cytotoxic chemotherapy without the benefit of molecular …

Role of enhancers in development and diseases

SS Maurya - Epigenomes, 2021 - mdpi.com
Enhancers are cis-regulatory elements containing short DNA sequences that serve as
binding sites for pioneer/regulatory transcription factors, thus orchestrating the regulation of …

Dynamic plasticity within the EMT spectrum, rather than static mesenchymal traits, drives tumor heterogeneity and metastatic progression of breast cancers

MS Brown, B Abdollahi, OM Wilkins, P Chakraborty… - bioRxiv, 2021 - biorxiv.org
Abstract The Epithelial-to-Mesenchymal Transition (EMT) is a developmental cellular
program frequently coopted by cancer cells and is a key contributor to both heterogeneity in …

Discrete regulatory modules instruct hematopoietic lineage commitment and differentiation

G Georgolopoulos, N Psatha, M Iwata… - Nature …, 2021 - nature.com
Lineage commitment and differentiation is driven by the concerted action of master
transcriptional regulators at their target chromatin sites. Multiple efforts have characterized …

Integrative analysis of epigenetics data identifies gene-specific regulatory elements

F Schmidt, A Marx, N Baumgarten, M Hebel… - Nucleic acids …, 2021 - academic.oup.com
Understanding how epigenetic variation in non-coding regions is involved in distal gene-
expression regulation is an important problem. Regulatory regions can be associated to …

Deregulation of enhancer structure, function, and dynamics in acute lymphoblastic leukemia

L Belver, R Albero, AA Ferrando - Trends in immunology, 2021 - cell.com
Enhancers control dynamic changes in gene expression and orchestrate the tightly
controlled transcriptional circuitries that direct and coordinate cell growth, proliferation …

Pancreatic cancer prognosis is predicted by a novel ATAC-array technology for assessing chromatin accessibility

S Dhara, S Chhangawala, H Chintalapudi, G Askan… - bioRxiv, 2021 - biorxiv.org
We investigated tumor-cell-intrinsic chromatin accessibility patterns of pancreatic ductal
adenocarcinoma (PDAC) by ATAC-seq on EpCAM+ PDAC malignant epithelial cells, sorted …