30 years of repeat expansion disorders: What have we learned and what are the remaining challenges?
C Depienne, JL Mandel - The American Journal of Human Genetics, 2021 - cell.com
Tandem repeats represent one of the most abundant class of variations in human genomes,
which are polymorphic by nature and become highly unstable in a length-dependent …
which are polymorphic by nature and become highly unstable in a length-dependent …
Straglr: discovering and genotyping tandem repeat expansions using whole genome long-read sequences
Tandem repeat (TR) expansion is the underlying cause of over 40 neurological disorders.
Long-read sequencing offers an exciting avenue over conventional technologies for …
Long-read sequencing offers an exciting avenue over conventional technologies for …
STRs: ancient architectures of the genome beyond the sequence
J Gharesouran, H Hosseinzadeh… - Journal of Molecular …, 2021 - Springer
Short tandem repeats (STRs) are commonly defined as short runs of repetitive nucleotides,
consisting of tandemly repeating 2–6-bp motif units, which are ubiquitously distributed …
consisting of tandemly repeating 2–6-bp motif units, which are ubiquitously distributed …
[HTML][HTML] Laboratory testing for fragile X, 2021 revision: a technical standard of the American College of Medical Genetics and Genomics (ACMG)
E Spector, A Behlmann, K Kronquist, NC Rose… - Genetics in …, 2021 - Elsevier
Molecular genetic testing of the FMR1 gene is commonly performed in clinical laboratories.
Pathogenic variants in the FMR1 gene are associated with fragile X syndrome, fragile X …
Pathogenic variants in the FMR1 gene are associated with fragile X syndrome, fragile X …
Pervasive cis effects of variation in copy number of large tandem repeats on local DNA methylation and gene expression
Variable number tandem repeats (VNTRs) are composed of large tandemly repeated motifs,
many of which are highly polymorphic in copy number. However, because of their large size …
many of which are highly polymorphic in copy number. However, because of their large size …
Genome-wide sequencing as a first-tier screening test for short tandem repeat expansions
IS Rajan-Babu, JJ Peng, R Chiu… - Genome medicine, 2021 - Springer
Background Screening for short tandem repeat (STR) expansions in next-generation
sequencing data can enable diagnosis, optimal clinical management/treatment, and …
sequencing data can enable diagnosis, optimal clinical management/treatment, and …
[HTML][HTML] Systematic analysis of short tandem repeats in 38,095 exomes provides an additional diagnostic yield
BPGH van der Sanden, J Corominas, M de Groot… - Genetics in …, 2021 - Elsevier
Purpose Expansions of a subset of short tandem repeats (STRs) have been implicated in
approximately 30 different human genetic disorders. Despite extensive application of exome …
approximately 30 different human genetic disorders. Despite extensive application of exome …
Low Prevalence of NOTCH2NLC GGC Repeat Expansion in White Patients with Movement Disorders
Background The objective of this study was to determine the prevalence of the GGC‐repeat
expansion in NOTCH2NLC in whites presenting with movement disorders. Methods We …
expansion in NOTCH2NLC in whites presenting with movement disorders. Methods We …
Assessing the utility of long-read nanopore sequencing for rapid and efficient characterization of mobile element insertions
CM Watson, LA Crinnion, H Lindsay, R Mitchell… - Laboratory …, 2021 - nature.com
Short-read next generation sequencing (NGS) has become the predominant first-line
technique used to diagnose patients with rare genetic conditions. Inherent limitations of …
technique used to diagnose patients with rare genetic conditions. Inherent limitations of …
Ethnically biased microsatellites contribute to differential gene expression and glutathione metabolism in Africans and Europeans
Approximately three percent of the human genome is occupied by microsatellites: a type of
short tandem repeat (STR). Microsatellites have well established effects on (a) the genetic …
short tandem repeat (STR). Microsatellites have well established effects on (a) the genetic …