Insights gained from single-cell analysis of immune cells in the tumor microenvironment
Understanding tumor immune microenvironments is critical for identifying immune modifiers
of cancer progression and developing cancer immunotherapies. Recent applications of …
of cancer progression and developing cancer immunotherapies. Recent applications of …
Advances and opportunities in single-cell transcriptomics for plant research
C Seyfferth, J Renema, JR Wendrich… - Annual Review of …, 2021 - annualreviews.org
Single-cell approaches are quickly changing our view on biological systems by increasing
the spatiotemporal resolution of our analyses to the level of the individual cell. The field of …
the spatiotemporal resolution of our analyses to the level of the individual cell. The field of …
Single-cell RNA-seq reveals fibroblast heterogeneity and increased mesenchymal fibroblasts in human fibrotic skin diseases
CC Deng, YF Hu, DH Zhu, Q Cheng, JJ Gu… - Nature …, 2021 - nature.com
Fibrotic skin disease represents a major global healthcare burden, characterized by
fibroblast hyperproliferation and excessive accumulation of extracellular matrix. Fibroblasts …
fibroblast hyperproliferation and excessive accumulation of extracellular matrix. Fibroblasts …
[HTML][HTML] GABA-receptive microglia selectively sculpt developing inhibitory circuits
Microglia, the resident immune cells of the brain, have emerged as crucial regulators of
synaptic refinement and brain wiring. However, whether the remodeling of distinct synapse …
synaptic refinement and brain wiring. However, whether the remodeling of distinct synapse …
High-accuracy long-read amplicon sequences using unique molecular identifiers with Nanopore or PacBio sequencing
High-throughput amplicon sequencing of large genomic regions remains challenging for
short-read technologies. Here, we report a high-throughput amplicon sequencing approach …
short-read technologies. Here, we report a high-throughput amplicon sequencing approach …
Single-cell RNA sequencing analysis: a step-by-step overview
Thanks to innovative sample-preparation and sequencing technologies, gene expression in
individual cells can now be measured for thousands of cells in a single experiment. Since its …
individual cells can now be measured for thousands of cells in a single experiment. Since its …
Direct comparative analyses of 10X genomics chromium and smart-seq2
Single-cell RNA sequencing (scRNA-seq) is generally used for profiling transcriptome of
individual cells. The droplet-based 10X Genomics Chromium (10X) approach and the plate …
individual cells. The droplet-based 10X Genomics Chromium (10X) approach and the plate …
[HTML][HTML] From bench to bedside: Single-cell analysis for cancer immunotherapy
EF Davis-Marcisak, A Deshpande, GL Stein-O'Brien… - Cancer cell, 2021 - cell.com
Single-cell technologies are emerging as powerful tools for cancer research. These
technologies characterize the molecular state of each cell within a tumor, enabling new …
technologies characterize the molecular state of each cell within a tumor, enabling new …
Separating measurement and expression models clarifies confusion in single-cell RNA sequencing analysis
A Sarkar, M Stephens - Nature genetics, 2021 - nature.com
The high proportion of zeros in typical single-cell RNA sequencing datasets has led to
widespread but inconsistent use of terminology such as dropout and missing data. Here, we …
widespread but inconsistent use of terminology such as dropout and missing data. Here, we …
Single-cell transcriptomics: current methods and challenges in data acquisition and analysis
Rapid cost drops and advancements in next-generation sequencing have made profiling of
cells at individual level a conventional practice in scientific laboratories worldwide. Single …
cells at individual level a conventional practice in scientific laboratories worldwide. Single …