Defining coalescent genes: theory meets practice in organelle phylogenomics

JJ Doyle - Systematic biology, 2022 - academic.oup.com
The species tree paradigm that dominates current molecular systematic practice infers
species trees from collections of sequences under assumptions of the multispecies …

Taxon‐specific or universal? Using target capture to study the evolutionary history of rapid radiations

G Yardeni, J Viruel, M Paris, J Hess… - Molecular Ecology …, 2022 - Wiley Online Library
Target capture has emerged as an important tool for phylogenetics and population genetics
in nonmodel taxa. Whereas developing taxon‐specific capture probes requires sustained …

[HTML][HTML] Deep insights into the plastome evolution and phylogenetic relationships of the tribe Urticeae (Family Urticaceae)

CA Ogoma, J Liu, GW Stull, MC Wambulwa… - Frontiers in plant …, 2022 - frontiersin.org
Urticeae sl, a tribe of Urticaceae well-known for their stinging trichomes, consists of more
than 10 genera and approximately 220 species. Relationships within this tribe remain poorly …

[HTML][HTML] Mahonia vs. Berberis unloaded: generic delimitation and infrafamilial classification of Berberidaceae based on plastid phylogenomics

CL Hsieh, CC Yu, YL Huang, KF Chung - Frontiers in plant science, 2022 - frontiersin.org
The early-diverging eudicot family Berberidaceae is composed of a morphologically diverse
assemblage of disjunctly distributed genera long praised for their great horticultural and …

Out of chaos: Phylogenomics of Asian Sonerileae

QJ Zhou, JH Dai, CW Lin, WL Ng, T Van Do… - Molecular Phylogenetics …, 2022 - Elsevier
Sonerileae is a diverse Melastomataceae lineage comprising ca. 1000 species in 44
genera, with> 70% of genera and species distributed in Asia. Asian Sonerileae are …

Toward finally unraveling the phylogenetic relationships of Juncaceae with respect to another cyperid family, Cyperaceae

V Brožová, J Proćków, LZ Drábková - Molecular Phylogenetics and …, 2022 - Elsevier
Juncaceae is a cosmopolitan family belonging to the cyperid clade of Poales together with
Cyperaceae and Thurniaceae. These families have global economic and ethnobotanical …

Deep Genotypic Species Delimitation of Aspergillus Section Flavi Isolated from Brazilian Foodstuffs and the Description of Aspergillus annui sp. nov. and Aspergillus …

JJ Silva, MHP Fungaro, X Wang, TO Larsen… - Journal of Fungi, 2022 - mdpi.com
Aspergillus section Flavi is a fungal group that is important in food because it contains
spoilage and potentially aflatoxigenic species. Aflatoxins are metabolites that are harmful to …

Incomplete lineage sorting and reticulate evolution mask species relationships in Brunelliaceae, an Andean family with rapid, recent diversification

J Murillo‐A, J Valencia‐D, CI Orozco… - American Journal of …, 2022 - Wiley Online Library
Premise To date, phylogenetic relationships within the monogeneric Brunelliaceae have
been based on morphological evidence, which does not provide sufficient phylogenetic …

Phylogenomic discordance suggests polytomies along the backbone of the large genus Solanum

E Gagnon, R Hilgenhof, A Orejuela… - American Journal of …, 2022 - Wiley Online Library
Premise Evolutionary studies require solid phylogenetic frameworks, but increased volumes
of phylogenomic data have revealed incongruent topologies among gene trees in many …

Hybridization and genome duplication for early evolutionary success in the Asian Palmate group of Araliaceae

A Gallego‐Narbón, J Wen, J Liu… - Journal of Systematics …, 2022 - Wiley Online Library
The phenomenal advances in sequencing techniques and analytical development during
the last decade have provided a unique opportunity to unravel the evolutionary history of …