Integrative omics approaches for biosynthetic pathway discovery in plants

KS Singh, JJJ van der Hooft, SCM van Wees… - Natural Product …, 2022 - pubs.rsc.org
Covering: up to 2022 With the emergence of large amounts of omics data, computational
approaches for the identification of plant natural product biosynthetic pathways and their …

Direct regulation of shikimate, early phenylpropanoid, and stilbenoid pathways by Subgroup 2 R2R3‐MYBs in grapevine

L Orduña, M Li, D Navarro‐Payá, C Zhang… - The Plant …, 2022 - Wiley Online Library
The stilbenoid pathway is responsible for the production of resveratrol in grapevine (Vitis
vinifera L.). A few transcription factors (TFs) have been identified as regulators of this …

Gene co-expression network analysis

JD Montenegro - Plant bioinformatics: methods and protocols, 2022 - Springer
Gene co-expression analysis is a data analysis technique that helps identify groups of
genes with similar expression patterns across several different conditions. By means of …

Transcriptomic and metabolomic integration as a resource in grapevine to study fruit metabolite quality traits

S Savoi, A Santiago, L Orduña, JT Matus - Frontiers in Plant Science, 2022 - frontiersin.org
Transcriptomics and metabolomics are methodologies being increasingly chosen to perform
molecular studies in grapevine (Vitis vinifera L.), focusing either on plant and fruit …

Unravelling lncRNA mediated gene expression as potential mechanism for regulating secondary metabolism in Citrus limon

KS Bordoloi, PM Baruah, M Das, N Agarwala - Food Bioscience, 2022 - Elsevier
Plant long non-coding RNAs (lncRNAs) are emerging as important regulators of gene
expression through various mechanisms viz. binding to double-stranded DNA (dsDNA) …

Transcriptome Analysis of Berries of Spine Grape (Vitis davidii Föex) Infected by Colletotrichum viniferum during Symptom Development

Y Lei, X Yuan, T Chen, Y Yuan, X Liu, X Tang, Q Chen - Horticulturae, 2022 - mdpi.com
Grape ripe rot (Colletotrichum viniferum) causes huge losses in grape production in
vineyards in southern China. However, the molecular mechanism against ripe rot in grape …