[HTML][HTML] The 2022 World Health Organization classification of tumours of the urinary system and male genital organs—part A: renal, penile, and testicular tumours
The fifth edition of the World Health Organization (WHO) classification of urogenital tumours
(WHO “Blue Book”), published in 2022, contains significant revisions. This review …
(WHO “Blue Book”), published in 2022, contains significant revisions. This review …
Cancer proteogenomics: current impact and future prospects
Genomic analyses in cancer have been enormously impactful, leading to the identification of
driver mutations and development of targeted therapies. But the functions of the vast majority …
driver mutations and development of targeted therapies. But the functions of the vast majority …
[HTML][HTML] Proteogenomic characterization identifies clinically relevant subgroups of intrahepatic cholangiocarcinoma
We performed proteogenomic characterization of intrahepatic cholangiocarcinoma (iCCA)
using paired tumor and adjacent liver tissues from 262 patients. Integrated proteogenomic …
using paired tumor and adjacent liver tissues from 262 patients. Integrated proteogenomic …
Proteogenomic characterization of 2002 human cancers reveals pan-cancer molecular subtypes and associated pathways
Y Zhang, F Chen, DS Chandrashekar… - Nature …, 2022 - nature.com
Mass-spectrometry-based proteomic data on human tumors—combined with corresponding
multi-omics data—present opportunities for systematic and pan-cancer proteogenomic …
multi-omics data—present opportunities for systematic and pan-cancer proteogenomic …
[HTML][HTML] Pan-cancer proteomic map of 949 human cell lines
The proteome provides unique insights into disease biology beyond the genome and
transcriptome. A lack of large proteomic datasets has restricted the identification of new …
transcriptome. A lack of large proteomic datasets has restricted the identification of new …
[HTML][HTML] Mapping single-cell transcriptomes in the intra-tumoral and associated territories of kidney cancer
Tumor behavior is intricately dependent on the oncogenic properties of cancer cells and
their multi-cellular interactions. To understand these dependencies within the wider …
their multi-cellular interactions. To understand these dependencies within the wider …
The E3 ligase adapter cereblon targets the C-terminal cyclic imide degron
The ubiquitin E3 ligase substrate adapter cereblon (CRBN) is a target of thalidomide and
lenalidomide, therapeutic agents used in the treatment of haematopoietic malignancies …
lenalidomide, therapeutic agents used in the treatment of haematopoietic malignancies …
Machine learning for multi-omics data integration in cancer
Multi-omics data analysis is an important aspect of cancer molecular biology studies and
has led to ground-breaking discoveries. Many efforts have been made to develop machine …
has led to ground-breaking discoveries. Many efforts have been made to develop machine …
Tryptophan depletion results in tryptophan-to-phenylalanine substitutants
A Pataskar, J Champagne, R Nagel, J Kenski, M Laos… - Nature, 2022 - nature.com
Activated T cells secrete interferon-γ, which triggers intracellular tryptophan shortage by
upregulating the indoleamine 2, 3-dioxygenase 1 (IDO1) enzyme,,–. Here we show that …
upregulating the indoleamine 2, 3-dioxygenase 1 (IDO1) enzyme,,–. Here we show that …
A proteogenomic analysis of clear cell renal cell carcinoma in a Chinese population
Y Qu, J Feng, X Wu, L Bai, W Xu, L Zhu, Y Liu… - Nature …, 2022 - nature.com
Clear cell renal cell carcinoma (ccRCC) is a common and aggressive subtype of renal
cancer. Here we conduct a comprehensive proteogenomic analysis of 232 tumor and …
cancer. Here we conduct a comprehensive proteogenomic analysis of 232 tumor and …