α-cyanobacteria possessing form IA RuBisCO globally dominate aquatic habitats

PJ Cabello-Yeves, DJ Scanlan, C Callieri… - The ISME …, 2022 - academic.oup.com
Abstract RuBisCO (ribulose 1, 5-bisphosphate carboxylase/oxygenase) is one the most
abundant enzymes on Earth. Virtually all food webs depend on its activity to supply fixed …

Ecogenomics sheds light on diverse lifestyle strategies in freshwater CPR

MC Chiriac, PA Bulzu, AS Andrei, Y Okazaki, S Nakano… - Microbiome, 2022 - Springer
Background The increased use of metagenomics and single-cell genomics led to the
discovery of organisms from phyla with no cultivated representatives and proposed new …

Chromosome-level genome assembly of Bactrocera dorsalis reveals its adaptation and invasion mechanisms

F Jiang, L Liang, J Wang, S Zhu - Communications Biology, 2022 - nature.com
Bactrocera dorsalis is an invasive polyphagous pest causing considerable ecological and
economic damage worldwide. We report a high-quality chromosome-level genome …

Elucidating the picocyanobacteria salinity divide through ecogenomics of new freshwater isolates

PJ Cabello-Yeves, C Callieri, A Picazo, L Schallenberg… - BMC biology, 2022 - Springer
Background Cyanobacteria are the major prokaryotic primary producers occupying a range
of aquatic habitats worldwide that differ in levels of salinity, making them a group of interest …

The modes of action of Mentha arvensis essential oil on the granary weevil Sitophilus granarius revealed by a label-free quantitative proteomic analysis

F Renoz, S Demeter, H Degand, SC Nicolis… - Journal of Pest …, 2022 - Springer
Although synthetic pesticides are still used to control insect pests, greater efforts have been
made to develop healthier and more environmentally friendly pesticides. Because of their …

Machine learning-based predictive modeling to identify genotypic traits associated with Salmonella enterica disease endpoints in isolates from ground chicken

CK Tanui, S Karanth, PMK Njage, J Meng, AK Pradhan - LWT, 2022 - Elsevier
As the cost of genome sequencing of foodborne pathogens decreases, it has become
possible to sequence a large number of isolates and evaluate those using machine learning …

Functional and phylogenetic analyses of camel rumen microbiota associated with different lignocellulosic substrates

J Gharechahi, S Sarikhan, JL Han, XZ Ding… - npj Biofilms and …, 2022 - nature.com
Rumen microbiota facilitates nutrition through digestion of recalcitrant lignocellulosic
substrates into energy-accessible nutrients and essential metabolites. Despite the high …

Systematic in silico discovery of novel solute carrier-like proteins from proteomes

G Gyimesi, MA Hediger - PLoS One, 2022 - journals.plos.org
Solute carrier (SLC) proteins represent the largest superfamily of transmembrane
transporters. While many of them play key biological roles, their systematic analysis has …

[PDF][PDF] Genomic basis of evolutionary adaptation in a warm-blooded fish

X Wang, M Qu, Y Liu, RF Schneider, Y Song, Z Chen… - The Innovation, 2022 - cell.com
Few fishes have evolved elevated body temperatures compared with ambient temperatures,
and only in opah (Lampris spp) is the entire body affected. To understand the molecular …

[HTML][HTML] Characterization and genomic analysis of two novel psychrotolerant Acidithiobacillus ferrooxidans strains from polar and subpolar environments

C Muñoz-Villagrán, J Grossolli-Gálvez… - Frontiers in …, 2022 - frontiersin.org
The bioleaching process is carried out by aerobic acidophilic iron-oxidizing bacteria that are
mainly mesophilic or moderately thermophilic. However, many mining sites are located in …