DNA methylation: a historical perspective

AL Mattei, N Bailly, A Meissner - Trends in Genetics, 2022 - cell.com
In 1925, 5-methylcytosine was first reported in bacteria. However, its biological importance
was not intuitive for several decades. After this initial lag, the ubiquitous presence of this …

Heavy metal transporters: Functional mechanisms, regulation, and application in phytoremediation

Z Yang, F Yang, JL Liu, HT Wu, H Yang, Y Shi… - Science of the Total …, 2022 - Elsevier
Heavy metal pollution in soil is a global problem with serious impacts on human health and
ecological security. Phytoextraction in phytoremediation, in which plants uptake and …

DNA methylation-free Arabidopsis reveals crucial roles of DNA methylation in regulating gene expression and development

L He, H Huang, M Bradai, C Zhao, Y You, J Ma… - Nature …, 2022 - nature.com
A contribution of DNA methylation to defense against invading nucleic acids and
maintenance of genome integrity is uncontested; however, our understanding of the extent …

DNA methylation in plant responses and adaption to abiotic stresses

M Sun, Z Yang, L Liu, L Duan - International Journal of Molecular …, 2022 - mdpi.com
Due to their sessile state, plants are inevitably affected by and respond to the external
environment. So far, plants have developed multiple adaptation and regulation strategies to …

Long-term effect of epigenetic modification in plant–microbe interactions: modification of DNA methylation induced by plant growth-promoting bacteria mediates …

C Chen, M Wang, J Zhu, Y Tang, H Zhang, Q Zhao… - Microbiome, 2022 - Springer
Background Soil microbiomes are considered a cornerstone of the next green revolution,
and plant growth-promoting bacteria (PGPB) are critical for microbiome engineering …

Parental and Environmental Control of Seed Dormancy in Arabidopsis thaliana

M Iwasaki, S Penfield… - Annual Review of Plant …, 2022 - annualreviews.org
Seed dormancy—the absence of seed germination under favorable germination conditions—
is a plant trait that evolved to enhance seedling survival by avoiding germination under …

DNA methylation underpins the epigenomic landscape regulating genome transcription in Arabidopsis

L Zhao, Q Zhou, L He, L Deng, R Lozano-Duran, G Li… - Genome biology, 2022 - Springer
Background It is challenging to determine the effect of DNA methylation on the epigenetic
landscape and the function in higher organisms due to the lack of DNA methylation-free …

Methylation of a MITE insertion in the MdRFNR1-1 promoter is positively associated with its allelic expression in apple in response to drought stress

C Niu, L Jiang, F Cao, C Liu, J Guo, Z Zhang… - The Plant …, 2022 - academic.oup.com
Miniature inverted-repeat transposable elements (MITEs) are widely distributed in the plant
genome and can be methylated. However, whether DNA methylation of MITEs is associated …

Chromatin‐remodeling complexes: Conserved and plant‐specific subunits in Arabidopsis

JY Shang, XJ He - Journal of integrative plant biology, 2022 - Wiley Online Library
Adenosine triphosphate‐dependent chromatin remodeling complexes are important for the
regulation of transcription, DNA replication, and genome stability in eukaryotes. Although …

The Arabidopsis APOLO and human UPAT sequence-unrelated long noncoding RNAs can modulate DNA and histone methylation machineries in plants

C Fonouni-Farde, A Christ, T Blein, MF Legascue… - Genome Biology, 2022 - Springer
Abstract Background RNA-DNA hybrid (R-loop)-associated long noncoding RNAs
(lncRNAs), including the Arabidopsis lncRNA AUXIN-REGULATED PROMOTER LOOP …