A super pan-genomic landscape of rice
L Shang, X Li, H He, Q Yuan, Y Song, Z Wei, H Lin… - Cell Research, 2022 - nature.com
Pan-genomes from large natural populations can capture genetic diversity and reveal
genomic complexity. Using de novo long-read assembly, we generated a graph-based …
genomic complexity. Using de novo long-read assembly, we generated a graph-based …
Two divergent haplotypes from a highly heterozygous lychee genome suggest independent domestication events for early and late-maturing cultivars
G Hu, J Feng, X Xiang, J Wang, J Salojärvi, C Liu… - Nature …, 2022 - nature.com
Lychee is an exotic tropical fruit with a distinct flavor. The genome of cultivar 'Feizixiao'was
assembled into 15 pseudochromosomes, totaling~ 470 Mb. High heterozygosity (2.27%) …
assembled into 15 pseudochromosomes, totaling~ 470 Mb. High heterozygosity (2.27%) …
A telomere-to-telomere gap-free reference genome of watermelon and its mutation library provide important resources for gene discovery and breeding
Y Deng, S Liu, Y Zhang, J Tan, X Li, X Chu, B Xu… - Molecular plant, 2022 - cell.com
Watermelon, Citrullus lanatus, is the world's third largest fruit crop. Reference genomes with
gaps and a narrow genetic base hinder functional genomics and genetic improvement of …
gaps and a narrow genetic base hinder functional genomics and genetic improvement of …
Graph-based pan-genome reveals structural and sequence variations related to agronomic traits and domestication in cucumber
Structural variants (SVs) represent a major source of genetic diversity and are related to
numerous agronomic traits and evolutionary events; however, their comprehensive …
numerous agronomic traits and evolutionary events; however, their comprehensive …
Chromosome-scale and haplotype-resolved genome assembly of a tetraploid potato cultivar
Potato is the most widely produced tuber crop worldwide. However, reconstructing the four
haplotypes of its autotetraploid genome remained an unsolved challenge. Here, we report …
haplotypes of its autotetraploid genome remained an unsolved challenge. Here, we report …
Repeat-based holocentromeres influence genome architecture and karyotype evolution
The centromere represents a single region in most eukaryotic chromosomes. However,
several plant and animal lineages assemble holocentromeres along the entire chromosome …
several plant and animal lineages assemble holocentromeres along the entire chromosome …
InsectBase 2.0: a comprehensive gene resource for insects
Y Mei, D Jing, S Tang, X Chen, H Chen… - Nucleic acids …, 2022 - academic.oup.com
Insects are the largest group of animals on the planet and have a huge impact on human life
by providing resources, transmitting diseases, and damaging agricultural crop production …
by providing resources, transmitting diseases, and damaging agricultural crop production …
High-resolution silkworm pan-genome provides genetic insights into artificial selection and ecological adaptation
X Tong, MJ Han, K Lu, S Tai, S Liang, Y Liu… - Nature …, 2022 - nature.com
The silkworm Bombyx mori is an important economic insect for producing silk, the “queen of
fabrics”. The currently available genomes limit the understanding of its genetic diversity and …
fabrics”. The currently available genomes limit the understanding of its genetic diversity and …
Reference genome assemblies reveal the origin and evolution of allohexaploid oat
Common oat (Avena sativa) is an important cereal crop serving as a valuable source of
forage and human food. Although reference genomes of many important crops have been …
forage and human food. Although reference genomes of many important crops have been …
Evolution of coastal forests based on a full set of mangrove genomes
Genomic studies are now poised to explore whole communities of species. The~ 70 species
of woody plants that anchor the coastal ecosystems of the tropics, collectively referred to as …
of woody plants that anchor the coastal ecosystems of the tropics, collectively referred to as …