[HTML][HTML] Solvated interaction energy: from small-molecule to antibody drug design
EO Purisima, CR Corbeil, F Gaudreault… - Frontiers in Molecular …, 2023 - frontiersin.org
Scoring functions are ubiquitous in structure-based drug design as an aid to predicting
binding modes and estimating binding affinities. Ideally, a scoring function should be …
binding modes and estimating binding affinities. Ideally, a scoring function should be …
[HTML][HTML] Identification mechanism of BACE1 on inhibitors probed by using multiple separate molecular dynamics simulations and comparative calculations of binding …
Y Wang, F Yang, D Yan, Y Zeng, B Wei, J Chen, W He - Molecules, 2023 - mdpi.com
β-amyloid cleaving enzyme 1 (BACE1) is regarded as an important target of drug design
toward the treatment of Alzheimer's disease (AD). In this study, three separate molecular …
toward the treatment of Alzheimer's disease (AD). In this study, three separate molecular …
DeepWEST: Deep learning of kinetic models with the Weighted Ensemble Simulation Toolkit for enhanced sampling
Recent advances in computational power and algorithms have enabled molecular dynamics
(MD) simulations to reach greater time scales. However, for observing conformational …
(MD) simulations to reach greater time scales. However, for observing conformational …
Structural and energetic basis of interaction between human estrogen-related receptor γ and environmental endocrine disruptors from multiple molecular dynamics …
L Chen, X Huang, Y Li, B Zhao, M Liang… - Journal of Hazardous …, 2023 - Elsevier
Environmental endocrine disruptors (EEDs), a class of molecules that are widespread in our
environment, may adversely affect the endocrine system. Exploring the interactions between …
environment, may adversely affect the endocrine system. Exploring the interactions between …
Mutations in the receptor-binding domain of human SARS CoV-2 spike protein increases its affinity to bind human ACE-2 receptor
GKRS Naresh, L Guruprasad - Journal of Biomolecular Structure …, 2023 - Taylor & Francis
The severe acute respiratory syndrome virus-2 (SARS CoV-2) infection has resulted in the
current global pandemic. The binding of SARS CoV-2 spike protein receptor-binding domain …
current global pandemic. The binding of SARS CoV-2 spike protein receptor-binding domain …
Mangiferin is a new potential antimalarial and anticancer drug for targeting serine hydroxymethyltransferase
Mangiferin, a polyphenolic xanthone glycoside found in various botanical sources, including
mango (Mangifera indica L.) leaves, can exhibit a variety of bioactivities. Although …
mango (Mangifera indica L.) leaves, can exhibit a variety of bioactivities. Although …
Computational Prediction of 3, 5-Diaryl-1H-Pyrazole and spiropyrazolines derivatives as potential acetylcholinesterase inhibitors for alzheimer disease treatment by …
MA El Alaouy, M Alaqarbeh, M Ouabane… - Journal of …, 2023 - Taylor & Francis
The efficacy of 40 synthesized variants of 3, 5-diaryl-1H-pyrazole and spiropyrazoline'
derivatives as acetylcholinesterase inhibitors is verified using a quantitative three …
derivatives as acetylcholinesterase inhibitors is verified using a quantitative three …
In Silico and In Vitro Potential of FDA-Approved Drugs for Antimalarial Drug Repurposing against Plasmodium Serine Hydroxymethyltransferases
P Mee-Udorn, K Phiwkaow, R Tinikul, K Sanachai… - ACS …, 2023 - ACS Publications
Malaria has spread in many countries, with a 12% increase in deaths after the coronavirus
disease 2019 pandemic. Malaria is one of the most concerning diseases in the Greater …
disease 2019 pandemic. Malaria is one of the most concerning diseases in the Greater …
Investigation of Solid Formation Enthalpy and Molecular Mechanics Energies of Amino Acids via Force Field Approach
Accurate determination of the thermodynamic and molecular mechanical properties of
amino acids will contribute to a better understanding of their folding mechanisms. In this …
amino acids will contribute to a better understanding of their folding mechanisms. In this …