Deep learning and ensemble deep learning for circRNA-RBP interaction prediction in the last decade: A review
D Lasantha, S Vidanagamachchi… - … Applications of Artificial …, 2023 - Elsevier
Circular ribonucleic acids (circRNAs) are widely expressed in cells and tissues and play vital
roles in cellular physiological processes. Their expressions are associated with …
roles in cellular physiological processes. Their expressions are associated with …
Satellite RNAs: emerging players in subnuclear architecture and gene regulation
K Ninomiya, T Yamazaki, T Hirose - The EMBO journal, 2023 - embopress.org
Satellite DNA is characterized by long, tandemly repeated sequences mainly found in
centromeres and pericentromeric chromosomal regions. The recent advent of telomere‐to …
centromeres and pericentromeric chromosomal regions. The recent advent of telomere‐to …
A central chaperone-like role for 14-3-3 proteins in human cells
D Segal, S Maier, GJ Mastromarco, WW Qian… - Molecular cell, 2023 - cell.com
3-3 proteins are highly conserved regulatory proteins that interact with hundreds of
structurally diverse clients and act as central hubs of signaling networks. However, how 14-3 …
structurally diverse clients and act as central hubs of signaling networks. However, how 14-3 …
Multiomics analyses reveal DARS1-AS1/YBX1–controlled posttranscriptional circuits promoting glioblastoma tumorigenesis/radioresistance
The glioblastoma (GBM) stem cell–like cells (GSCs) are critical for tumorigenesis/therapeutic
resistance of GBM. Mounting evidence supports tumor-promoting function of long noncoding …
resistance of GBM. Mounting evidence supports tumor-promoting function of long noncoding …
Comparative analysis of genome-scale, base-resolution DNA methylation profiles across 580 animal species
J Klughammer, D Romanovskaia, A Nemc… - Nature …, 2023 - nature.com
Methylation of cytosines is a prototypic epigenetic modification of the DNA. It has been
implicated in various regulatory mechanisms across the animal kingdom and particularly in …
implicated in various regulatory mechanisms across the animal kingdom and particularly in …
Nucleocytoplasmic mRNA redistribution accompanies RNA binding protein mislocalization in ALS motor neurons and is restored by VCP ATPase inhibition
Amyotrophic lateral sclerosis (ALS) is characterized by nucleocytoplasmic mislocalization of
the RNA-binding protein (RBP) TDP-43. However, emerging evidence suggests more …
the RNA-binding protein (RBP) TDP-43. However, emerging evidence suggests more …
[HTML][HTML] Multi-level functional genomics reveals molecular and cellular oncogenicity of patient-based 3′ untranslated region mutations
Summary 3′ untranslated region (3′ UTR) somatic mutations represent a largely
unexplored avenue of alternative oncogenic gene dysregulation. To determine the …
unexplored avenue of alternative oncogenic gene dysregulation. To determine the …
Mechanism of U6 snRNA oligouridylation by human TUT1
S Yamashita, K Tomita - Nature Communications, 2023 - nature.com
U6 snRNA is a catalytic RNA responsible for pre-mRNA splicing reactions and undergoes
various post-transcriptional modifications during its maturation process. The 3' …
various post-transcriptional modifications during its maturation process. The 3' …
MYC is a clinically significant driver of mTOR inhibitor resistance in breast cancer
J Bhin, J Yemelyanenko, X Chao… - Journal of Experimental …, 2023 - rupress.org
Targeting the PI3K–AKT–mTOR pathway is a promising therapeutic strategy for breast
cancer treatment. However, low response rates and development of resistance to PI3K–AKT …
cancer treatment. However, low response rates and development of resistance to PI3K–AKT …
Deciphering RNA splicing logic with interpretable machine learning
SE Liao, M Sudarshan… - Proceedings of the …, 2023 - National Acad Sciences
Machine learning methods, particularly neural networks trained on large datasets, are
transforming how scientists approach scientific discovery and experimental design …
transforming how scientists approach scientific discovery and experimental design …