Methods and insights from single-cell expression quantitative trait loci

JB Kang, A Raveane, A Nathan… - Annual review of …, 2023 - annualreviews.org
Recent advancements in single-cell technologies have enabled expression quantitative trait
locus (eQTL) analysis across many individuals at single-cell resolution. Compared with bulk …

[HTML][HTML] An integrated cell atlas of the lung in health and disease

L Sikkema, C Ramírez-Suástegui, DC Strobl… - Nature Medicine, 2023 - nature.com
Single-cell technologies have transformed our understanding of human tissues. Yet, studies
typically capture only a limited number of donors and disagree on cell type definitions …

[HTML][HTML] Spatial multiomics map of trophoblast development in early pregnancy

A Arutyunyan, K Roberts, K Troulé, FCK Wong… - Nature, 2023 - nature.com
The relationship between the human placenta—the extraembryonic organ made by the
fetus, and the decidua—the mucosal layer of the uterus, is essential to nurture and protect …

An inflammatory state remodels the immune microenvironment and improves risk stratification in acute myeloid leukemia

A Lasry, B Nadorp, M Fornerod, D Nicolet, H Wu… - Nature cancer, 2023 - nature.com
Acute myeloid leukemia (AML) is a hematopoietic malignancy with poor prognosis and
limited treatment options. Here we provide a comprehensive census of the bone marrow …

[HTML][HTML] Spatially resolved multiomics of human cardiac niches

K Kanemaru, J Cranley, D Muraro, AMA Miranda… - Nature, 2023 - nature.com
The function of a cell is defined by its intrinsic characteristics and its niche: the tissue
microenvironment in which it dwells. Here we combine single-cell and spatial …

[PDF][PDF] A platform for efficient establishment and drug-response profiling of high-grade serous ovarian cancer organoids

W Senkowski, L Gall-Mas, MM Falco, Y Li, K Lavikka… - Developmental Cell, 2023 - cell.com
The broad research use of organoids from high-grade serous ovarian cancer (HGSC) has
been hampered by low culture success rates and limited availability of fresh tumor material …

Large-scale production of human blastoids amenable to modeling blastocyst development and maternal-fetal cross talk

L Yu, D Logsdon, CA Pinzon-Arteaga, J Duan, T Ezashi… - Cell Stem Cell, 2023 - cell.com
Recent advances in human blastoids have opened new avenues for modeling early human
development and implantation. One limitation of our first protocol for human blastoid …

Standardization and interpretation of RNA-sequencing for transplantation

G Thareja, H Suryawanshi, X Luo… - Transplantation, 2023 - journals.lww.com
Abstract RNA-sequencing (RNA-seq) is a technique to determine the order of nucleotides in
an RNA segment. Modern sequencing platforms simultaneously sequence millions of RNA …

[HTML][HTML] Single-cell atlas of healthy human blood unveils age-related loss of NKG2C+ GZMB− CD8+ memory T cells and accumulation of type 2 memory T cells

M Terekhova, A Swain, P Bohacova, E Aladyeva… - Immunity, 2023 - Elsevier
Extensive, large-scale single-cell profiling of healthy human blood at different ages is one of
the critical pending tasks required to establish a framework for the systematic understanding …

[HTML][HTML] Cryobiopsy: a breakthrough strategy for clinical utilization of lung cancer organoids

D Park, D Lee, Y Kim, Y Park, YJ Lee, JE Lee, MK Yeo… - Cells, 2023 - mdpi.com
One major challenge associated with lung cancer organoids (LCOs) is their predominant
derivation from surgical specimens of patients with early-stage lung cancer. However …