The conserved domain database in 2023
J Wang, F Chitsaz, MK Derbyshire… - Nucleic Acids …, 2023 - academic.oup.com
NLM's conserved domain database (CDD) is a collection of protein domain and protein
family models constructed as multiple sequence alignments. Its main purpose is to provide …
family models constructed as multiple sequence alignments. Its main purpose is to provide …
Quantitative proteomics reveals key pathways in the symbiotic interface and the likely extracellular property of soybean symbiosome
An effective symbiosis between legumes and rhizobia relies largely on diverse proteins at
the plant-rhizobium interface for material transportation and signal transduction during …
the plant-rhizobium interface for material transportation and signal transduction during …
The genome of Magnolia hypoleuca provides a new insight into cold tolerance and the evolutionary position of magnoliids
L Zhou, F Hou, L Wang, L Zhang, Y Wang… - Frontiers in Plant …, 2023 - frontiersin.org
Magnolia hypoleuca Sieb. & Zucc, a member of the Magnoliaceae of magnoliids, is one of
the most economically valuable, phylogenetic and ornamental tree species in Eastern …
the most economically valuable, phylogenetic and ornamental tree species in Eastern …
A de novo assembled genome of the Tibetan Partridge (Perdix hodgsoniae) and its high‐altitude adaptation
X Li, X Wang, C Yang, L Lin, H Yuan, F Lei… - Integrative …, 2023 - Wiley Online Library
Abstract The Tibetan Partridge (Perdix hodgsoniae) is an endemic species distributed in
high‐altitude areas of 3600–5600 m on the Qinghai–Tibet Plateau. To explore how the …
high‐altitude areas of 3600–5600 m on the Qinghai–Tibet Plateau. To explore how the …
Characterization of a GH10 extremely thermophilic xylanase from the metagenome of hot spring for prebiotic production
YR Yin, XW Li, CH Long, L Li, YY Hang, MD Rao… - Scientific Reports, 2023 - nature.com
A xylanase gene (named xyngmqa) was identified from the metagenomic data of the
Gumingquan hot spring (92.5° C, pH 9.2) in Tengchong City, Yunnan Province, southwest …
Gumingquan hot spring (92.5° C, pH 9.2) in Tengchong City, Yunnan Province, southwest …
Spatial and temporal conversion of nitrogen using Arthrobacter sp. 24S4–2, a strain obtained from Antarctica
Y Liu, Y Zhang, Y Huang, J Niu, J Huang… - Frontiers in …, 2023 - frontiersin.org
According to average nucleotide identity (ANI) analysis of the complete genomes, strain
24S4–2 isolated from Antarctica is considered as a potential novel Arthrobacter species …
24S4–2 isolated from Antarctica is considered as a potential novel Arthrobacter species …
Genomic Assessment of the Contribution of the Wolbachia Endosymbiont of Eurosta solidaginis to Gall Induction
We explored the genome of the Wolbachia strain, w Esol, symbiotic with the plant-gall-
inducing fly Eurosta solidaginis with the goal of determining if w Esol contributes to gall …
inducing fly Eurosta solidaginis with the goal of determining if w Esol contributes to gall …
High-quality wild barley genome assemblies and annotation with Nanopore long reads and Hi-C sequencing data
Abstract Wild barley, from “Evolution Canyon (EC)” in Mount Carmel, Israel, are ideal models
for cereal chromosome evolution studies. Here, the wild barley EC_S1 is from the south …
for cereal chromosome evolution studies. Here, the wild barley EC_S1 is from the south …
Vertical niche occupation and potential metabolic interplay of microbial consortia in a deeply stratified meromictic model lake
PJ Cabello‐Yeves, A Picazo… - Limnology and …, 2023 - Wiley Online Library
The microbial ecology of meromictic lakes assessed with “omics” is still poorly studied
compared to other aquatic systems. Here, a combination of metagenomics, high resolution …
compared to other aquatic systems. Here, a combination of metagenomics, high resolution …
Single‐amplified genomes reveal most streamlined free‐living marine bacteria
JJ Roda‐Garcia, JM Haro‐Moreno… - Environmental …, 2023 - Wiley Online Library
Evolutionary adaptations of prokaryotes to the environment sometimes result in genome
reduction. Our knowledge of this phenomenon among free‐living bacteria remains scarce …
reduction. Our knowledge of this phenomenon among free‐living bacteria remains scarce …