The conserved domain database in 2023

J Wang, F Chitsaz, MK Derbyshire… - Nucleic Acids …, 2023 - academic.oup.com
NLM's conserved domain database (CDD) is a collection of protein domain and protein
family models constructed as multiple sequence alignments. Its main purpose is to provide …

Quantitative proteomics reveals key pathways in the symbiotic interface and the likely extracellular property of soybean symbiosome

Y Luo, W Liu, J Sun, ZR Zhang, WC Yang - Journal of Genetics and …, 2023 - Elsevier
An effective symbiosis between legumes and rhizobia relies largely on diverse proteins at
the plant-rhizobium interface for material transportation and signal transduction during …

The genome of Magnolia hypoleuca provides a new insight into cold tolerance and the evolutionary position of magnoliids

L Zhou, F Hou, L Wang, L Zhang, Y Wang… - Frontiers in Plant …, 2023 - frontiersin.org
Magnolia hypoleuca Sieb. & Zucc, a member of the Magnoliaceae of magnoliids, is one of
the most economically valuable, phylogenetic and ornamental tree species in Eastern …

A de novo assembled genome of the Tibetan Partridge (Perdix hodgsoniae) and its high‐altitude adaptation

X Li, X Wang, C Yang, L Lin, H Yuan, F Lei… - Integrative …, 2023 - Wiley Online Library
Abstract The Tibetan Partridge (Perdix hodgsoniae) is an endemic species distributed in
high‐altitude areas of 3600–5600 m on the Qinghai–Tibet Plateau. To explore how the …

Characterization of a GH10 extremely thermophilic xylanase from the metagenome of hot spring for prebiotic production

YR Yin, XW Li, CH Long, L Li, YY Hang, MD Rao… - Scientific Reports, 2023 - nature.com
A xylanase gene (named xyngmqa) was identified from the metagenomic data of the
Gumingquan hot spring (92.5° C, pH 9.2) in Tengchong City, Yunnan Province, southwest …

Spatial and temporal conversion of nitrogen using Arthrobacter sp. 24S4–2, a strain obtained from Antarctica

Y Liu, Y Zhang, Y Huang, J Niu, J Huang… - Frontiers in …, 2023 - frontiersin.org
According to average nucleotide identity (ANI) analysis of the complete genomes, strain
24S4–2 isolated from Antarctica is considered as a potential novel Arthrobacter species …

Genomic Assessment of the Contribution of the Wolbachia Endosymbiont of Eurosta solidaginis to Gall Induction

N Fiutek, MB Couger, S Pirro, SW Roy… - International Journal of …, 2023 - mdpi.com
We explored the genome of the Wolbachia strain, w Esol, symbiotic with the plant-gall-
inducing fly Eurosta solidaginis with the goal of determining if w Esol contributes to gall …

High-quality wild barley genome assemblies and annotation with Nanopore long reads and Hi-C sequencing data

R Pan, H Hu, Y Xiao, L Xu, Y Xu, K Ouyang, C Li, T He… - Scientific data, 2023 - nature.com
Abstract Wild barley, from “Evolution Canyon (EC)” in Mount Carmel, Israel, are ideal models
for cereal chromosome evolution studies. Here, the wild barley EC_S1 is from the south …

Vertical niche occupation and potential metabolic interplay of microbial consortia in a deeply stratified meromictic model lake

PJ Cabello‐Yeves, A Picazo… - Limnology and …, 2023 - Wiley Online Library
The microbial ecology of meromictic lakes assessed with “omics” is still poorly studied
compared to other aquatic systems. Here, a combination of metagenomics, high resolution …

Single‐amplified genomes reveal most streamlined free‐living marine bacteria

JJ Roda‐Garcia, JM Haro‐Moreno… - Environmental …, 2023 - Wiley Online Library
Evolutionary adaptations of prokaryotes to the environment sometimes result in genome
reduction. Our knowledge of this phenomenon among free‐living bacteria remains scarce …