cis-Regulatory Elements in Plant Development, Adaptation, and Evolution

AP Marand, AL Eveland, K Kaufmann… - Annual review of …, 2023 - annualreviews.org
cis-Regulatory elements encode the genomic blueprints that ensure the proper
spatiotemporal patterning of gene expression necessary for appropriate development and …

Machine learning bridges omics sciences and plant breeding

J Yan, X Wang - Trends in Plant Science, 2023 - cell.com
Some of the biological knowledge obtained from fundamental research will be implemented
in applied plant breeding. To bridge basic research and breeding practice, machine learning …

Frontiers and techniques in plant gene regulation

T Jores, M Hamm, JT Cuperus, C Queitsch - Current Opinion in Plant …, 2023 - Elsevier
Understanding plant gene regulation has been a priority for generations of plant scientists.
However, due to its complex nature, the regulatory code governing plant gene expression …

[PDF][PDF] Single-cell transcriptomic analysis reveals the developmental trajectory and transcriptional regulatory networks of pigment glands in Gossypium bickii

Y Sun, Y Han, K Sheng, P Yang, Y Cao, H Li, QH Zhu… - Molecular Plant, 2023 - cell.com
Comprehensive utilization of cottonseeds is limited by the presence of pigment glands and
its inclusion gossypol. The ideal cotton has glandless seeds but a glanded plant, a trait …

[PDF][PDF] Single-cell and spatial multi-omics in the plant sciences: Technical advances, applications, and perspectives

X Yu, Z Liu, X Sun - Plant Communications, 2023 - cell.com
Plants contain a large number of cell types and exhibit complex regulatory mechanisms.
Studies at the single-cell level have gradually become more common in plant science …

[PDF][PDF] Single-nucleus sequencing deciphers developmental trajectories in rice pistils

C Li, S Zhang, X Yan, P Cheng, H Yu - Developmental Cell, 2023 - cell.com
Angiosperms possess a life cycle with an alternation of sporophyte and gametophyte
generations, which happens in plant organs like pistils. Rice pistils contain ovules and …

Transcription factors KANADI 1, MYB DOMAIN PROTEIN 44, and PHYTOCHROME INTERACTING FACTOR 4 regulate long intergenic noncoding RNAs expressed in …

L Liu, M Heidecker, T Depuydt… - Plant …, 2023 - academic.oup.com
Thousands of long intergenic noncoding RNAs (lincRNAs) have been identified in plant
genomes. While some lincRNAs have been characterized as important regulators in …

Endoreduplication in plant organogenesis: a means to boost fruit growth

E Tourdot, JP Mauxion, N Gonzalez… - Journal of …, 2023 - academic.oup.com
Endoreduplication is the major source of somatic endopolyploidy in higher plants, and leads
to variation in cell ploidy levels due to iterative rounds of DNA synthesis in the absence of …

[HTML][HTML] Deciphering spike architecture formation towards yield improvement in wheat

X Luo, Y Yang, X Lin, J Xiao - Journal of genetics and genomics, 2023 - Elsevier
Wheat is the most widely-grown crop globally, providing 20% of the daily consumed calories
and protein content around the world. With the growing global population and frequent …

[PDF][PDF] scPlant: a versatile framework for single-cell transcriptomic data analysis in plants

S Cao, Z He, R Chen, Y Luo, LY Fu, X Zhou, C He… - Plant …, 2023 - cell.com
Single-cell transcriptomics has been fully embraced in plant biological research and is
revolutionizing our understanding of plant growth, development, and responses to external …