Translating virome analyses to support biosecurity, on-farm management, and crop breeding

RI Alcalá Briseño, O Batuman, J Brawner… - Frontiers in Plant …, 2023 - frontiersin.org
Virome analysis via high-throughput sequencing (HTS) allows rapid and massive virus
identification and diagnoses, expanding our focus from individual samples to the ecological …

Core-predominant gut fungus Kazachstania slooffiae promotes intestinal epithelial glycolysis via lysine desuccinylation in pigs

J Hu, J Chen, Q Hou, X Xu, J Ren, L Ma, X Yan - Microbiome, 2023 - Springer
Background Gut fungi are increasingly recognized as important contributors to host
physiology, although most studies have focused on gut bacteria. Post-translational …

Spatial self-organization of metabolism in microbial systems: a matter of enzymes and chemicals

M Ackermann, S van Vliet - Cell Systems, 2023 - cell.com
Most bacteria live in dense, spatially structured communities such as biofilms. The high
density allows cells to alter the local microenvironment, whereas the limited mobility can …

Soil and bark biodiversity forms discrete islands between vineyards that are not affected by distance or management regime

L Jiraska, B Jones, SJ Knight, J Lennox… - Environmental …, 2023 - Wiley Online Library
Within geographic regions, the existing data suggest that physical habitat (bark, soil, etc.) is
the strongest factor determining agroecosystem microbial community assemblage, followed …

Island area and remoteness shape plant and soil bacterial diversity through land use and biological invasion

M Xu, A Yang, X Yang, W Cao, Z Zhang, Z Li… - Functional …, 2023 - Wiley Online Library
Biodiversity is declining dramatically due to human‐driven land use change and biological
invasion, but our knowledge of how such drivers influence plant and heterotroph diversity on …

Distinct and temporally stable assembly mechanisms shape bacterial and fungal communities in vineyard soils

S Larsen, D Albanese, J Stegen, P Franceschi… - Microbial Ecology, 2023 - Springer
Microbial communities in agricultural soils are fundamental for plant growth and in vineyard
ecosystems contribute to defining regional wine quality. Managing soil microbes towards …

Rhizosphere soil microbes benefit carbon and nitrogen sinks under long-term afforestation on the Tibetan Plateau

R Liu, Y Yao, Q Li, Z Cai, D Wei, X Wang, S Zhang - Catena, 2023 - Elsevier
Afforestation enhances the soil carbon (C) and nitrogen (N) sinks, critical for mitigating
global warming and improving the ecological environment, processes that may be mediated …

Expanding Antarctic biogeography: microbial ecology of Antarctic island soils

PH Lebre, J Bosch, C Coclet, R Hallas, ID Hogg… - …, 2023 - Wiley Online Library
The majority of islands surrounding the Antarctic continent are poorly characterized in terms
of microbial macroecology due to their remote locations, geographical isolation and access …

Scale dependency of community assembly differs between coastal marine bacteria and fungi

Y Xu, X Chen, C Graco‐Roza, J Soininen - Ecography, 2023 - Wiley Online Library
It is often assumed that community assembly processes, ie deterministic or stochastic factors
determining the structure of communities, vary with spatial scale. However, evidence …

e DNA metabarcoding analysis reveals the consequence of creating ecosystem‐scale refugia from deer grazing for the soil microbial communities

K Kadowaki, MN Honjo, N Nakamura… - Environmental …, 2023 - Wiley Online Library
Ungulate overbrowsing is a growing problem in forests worldwide due to its prolonged and
pervasive impact on plant biodiversity and ecosystem functioning. It has been shown that …