Understanding mutations in human SARS-CoV-2 spike glycoprotein: a systematic review & meta-analysis

R Kumar, Y Srivastava, P Muthuramalingam, SK Singh… - Viruses, 2023 - mdpi.com
Genetic variant (s) of concern (VoC) of SARS-CoV-2 have been emerging worldwide due to
mutations in the gene encoding spike glycoprotein. We performed comprehensive analyses …

Clinical characteristics and novel mutations of omicron subvariant XBB in Tamil Nadu, India–a cohort study

ST Selvavinayagam, SJ Karishma… - The Lancet Regional …, 2023 - thelancet.com
Background Despite the continued vaccination efforts, there had been a surge in
breakthrough infections, and the emergence of the B. 1.1. 529 omicron variant of SARS-CoV …

Rapid genomic surveillance of SARS-CoV-2 in a dense urban community of Kathmandu Valley using sewage samples

R Napit, P Manandhar, A Chaudhary, B Shrestha… - PloS one, 2023 - journals.plos.org
Understanding disease burden and transmission dynamics in resource-limited, low-income
countries like Nepal are often challenging due to inadequate surveillance systems. These …

Impact of toll-like receptor 2 and 9 gene polymorphisms on COVID-19: susceptibility, severity, and thrombosis

AM Alhabibi, AS Hassan, NM Abd Elbaky… - Journal of …, 2023 - Taylor & Francis
Background Toll-like receptors (TLRs) play an important role in activation of innate and
adaptive immune responses. Aim We aimed to detect the association between TLR2 …

The role of S477N mutation in the molecular behavior of SARS‐CoV‐2 spike protein: An in‐silico perspective

M Mondeali, A Etemadi, K Barkhordari… - Journal of Cellular …, 2023 - Wiley Online Library
The attachment of SARA‐CoV‐2 happens between ACE2 and the receptor binding domain
(RBD) on the spike protein. Mutations in this domain can affect the binding affinity of the …

The evolution of SARS-CoV-2 and the COVID-19 pandemic

Y Si, W Wu, X Xue, X Sun, Y Qin, Y Li, C Qiu, Y Li… - PeerJ, 2023 - peerj.com
Scientists have made great efforts to understand the evolution of SARS-CoV-2 (Severe
Acute Respiratory Syndrome Coronavirus 2) to provide crucial information to public health …

Mutational analysis of circulating omicron SARS-CoV-2 lineages in the Al-baha region of Saudi arabia

SSR Almalki, MA Izhari, HE Alyahyawi… - Journal of …, 2023 - Taylor & Francis
Purpose Omicron (B. 1.1. 529) is one of the highly mutated variants of concern of SARS-CoV-
2. Lineages of Omicron bear a remarkable degree of mutations leading to enhanced …

Evolutionary trajectory of SARS-CoV-2 genome shifts during widespread vaccination and emergence of Omicron variant

K Gayvert, S McKay, WK Lim, A Baum, C Kyratsous… - npj Viruses, 2023 - nature.com
Understanding the adaptation of SARS-CoV-2 is critical for the development of effective
treatments against this exceptionally successful human pathogen. To predict the emergence …

Thermodynamic analysis of the interactions between human ACE2 and spike RBD of Betacoronaviruses (SARS‐CoV‐1 and SARS‐CoV‐2)

A Rombel‐Bryzek, A Miller, D Witkowska - FEBS Open Bio, 2023 - Wiley Online Library
There are many scientific reports on the interaction of the SARS‐CoV‐2 virus S protein (and
its RBD) with the human ACE2 receptor protein. However, there are no reliable data on how …

Exploring the binding capacity of lactic acid bacteria derived bacteriocins against RBD of SARS-CoV-2 Omicron variant by molecular simulations

I Erol, SE Kotil, F Ortakci, S Durdagi - Journal of Biomolecular …, 2023 - Taylor & Francis
The changes in the SARS-CoV-2 genome have resulted in the emergence of new variants.
Some of the variants have been classified as variants of concern (VOC). These strains have …