Droplet-based microfluidics

T Moragues, D Arguijo, T Beneyton, C Modavi… - Nature Reviews …, 2023 - nature.com
Droplet-based microfluidic systems generate, manipulate and control sub-microlitre droplets
enclosed within an immiscible carrier fluid. Owing to a number of remarkable features, such …

Single-cell and spatial transcriptomics: deciphering brain complexity in health and disease

M Piwecka, N Rajewsky, A Rybak-Wolf - Nature Reviews Neurology, 2023 - nature.com
In the past decade, single-cell technologies have proliferated and improved from their
technically challenging beginnings to become common laboratory methods capable of …

Absolute quantification of single-base m6A methylation in the mammalian transcriptome using GLORI

C Liu, H Sun, Y Yi, W Shen, K Li, Y Xiao, F Li, Y Li… - Nature …, 2023 - nature.com
Abstract N 6-methyladenosine (m6A) is the most abundant RNA modification in mammalian
cells and the best-studied epitranscriptomic mark. Despite the development of various tools …

DeepConsensus improves the accuracy of sequences with a gap-aware sequence transformer

G Baid, DE Cook, K Shafin, T Yun… - Nature …, 2023 - nature.com
Circular consensus sequencing with Pacific Biosciences (PacBio) technology generates
long (10–25 kilobases), accurate 'HiFi'reads by combining serial observations of a DNA …

Kupffer-cell-derived IL-6 is repurposed for hepatocyte dedifferentiation via activating progenitor genes from injury-specific enhancers

L Li, L Cui, P Lin, Z Liu, S Bao, X Ma, H Nan, W Zhu… - Cell Stem Cell, 2023 - cell.com
Stem cell-independent reprogramming of differentiated cells has recently been identified as
an important paradigm for repairing injured tissues. Following periportal injury, mature …

[HTML][HTML] Continuous germinal center invasion contributes to the diversity of the immune response

T Hägglöf, M Cipolla, M Loewe, ST Chen, L Mesin… - Cell, 2023 - cell.com
Antibody responses are characterized by increasing affinity and diversity over time. Affinity
maturation occurs in germinal centers by a mechanism that involves repeated cycles of …

Spatial metabolomics reveals glycogen as an actionable target for pulmonary fibrosis

LR Conroy, HA Clarke, DB Allison, SS Valenca… - Nature …, 2023 - nature.com
Matrix assisted laser desorption/ionization imaging has greatly improved our understanding
of spatial biology, however a robust bioinformatic pipeline for data analysis is lacking. Here …

Droplet-based method and apparatus for composite single-cell nucleic acid analysis

A Regev, EZ Macosko, SA McCarroll… - US Patent …, 2023 - Google Patents
US11597964B2 - Droplet-based method and apparatus for composite single-cell nucleic acid
analysis - Google Patents US11597964B2 - Droplet-based method and apparatus for composite …

PD-L1/PD-1 checkpoint pathway regulates hippocampal neuronal excitability and learning and memory behavior

J Zhao, S Bang, K Furutani, A McGinnis, C Jiang… - Neuron, 2023 - cell.com
Summary Programmed death protein 1 (PD-1) and its ligand PD-L1 constitute an immune
checkpoint pathway. We report that neuronal PD-1 signaling regulates learning/memory in …

Challenges and opportunities to computationally deconvolve heterogeneous tissue with varying cell sizes using single-cell RNA-sequencing datasets

SK Maden, SH Kwon, LA Huuki-Myers… - Genome biology, 2023 - Springer
Deconvolution of cell mixtures in “bulk” transcriptomic samples from homogenate human
tissue is important for understanding disease pathologies. However, several experimental …