Chiral induced spin selectivity

BP Bloom, Y Paltiel, R Naaman, DH Waldeck - Chemical Reviews, 2024 - ACS Publications
Since the initial landmark study on the chiral induced spin selectivity (CISS) effect in 1999,
considerable experimental and theoretical efforts have been made to understand the …

G protein-coupled receptors (GPCRs): advances in structures, mechanisms, and drug discovery

M Zhang, T Chen, X Lu, X Lan, Z Chen… - Signal Transduction and …, 2024 - nature.com
G protein-coupled receptors (GPCRs), the largest family of human membrane proteins and
an important class of drug targets, play a role in maintaining numerous physiological …

Tutorial on how to build non-Markovian dynamic models from molecular dynamics simulations for studying protein conformational changes

Y Wu, S Cao, Y Qiu, X Huang - The Journal of Chemical Physics, 2024 - pubs.aip.org
Protein conformational changes play crucial roles in their biological functions. In recent
years, the Markov State Model (MSM) constructed from extensive Molecular Dynamics (MD) …

Allosteric drugs: New principles and design approaches

WV Tee, IN Berezovsky - Current Opinion in Structural Biology, 2024 - Elsevier
Focusing on an important biomedical implication of allostery–design of allosteric drugs, we
describe characteristics of allosteric sites, effectors, and their modes of actions …

[HTML][HTML] Probing allosteric communication with combined molecular dynamics simulations and network analysis

M Bernetti, S Bosio, V Bresciani, F Falchi… - Current Opinion in …, 2024 - Elsevier
Understanding the allosteric mechanisms within biomolecules involved in diseases is of
paramount importance for drug discovery. Indeed, characterizing communication pathways …

Application of established computational techniques to identify potential SARS-CoV-2 Nsp14-MTase inhibitors in low data regimes

AK Nigam, MFD Hurley, F Li, E Konkoľová, M Klíma… - Digital …, 2024 - pubs.rsc.org
The COVID-19 pandemic, caused by the SARS-CoV-2 virus, has led to significant global
morbidity and mortality. A crucial viral protein, the non-structural protein 14 (nsp14) …

Adaptive Workflows of Machine Learning Illuminate the Sequential Operation Mechanism of the TAK1′ s Allosteric Network

N Ray Chaudhuri, S Ghosh Dastidar - Biochemistry, 2024 - ACS Publications
Allostery is a fundamental mechanism driving biomolecular processes that holds significant
therapeutic concern. Our study rigorously investigates how two distinct machine-learning …

Discovery of a Potential Allosteric Site in the SARS-CoV-2 Spike Protein and Targeting Allosteric Inhibitor to Stabilize the RBD Down State Using a Computational …

T Li, Z Yan, W Zhou, Q Liu, J Liu… - Current Computer-Aided …, 2024 - ingentaconnect.com
Background: The novel coronavirus disease 2019 (COVID-19) caused by severe acute
respiratory syndrome coronavirus 2 (SARS-CoV-2) has led to a worldwide public health …

A Fresh Look at the Normal Mode Analysis of Proteins: Introducing Allosteric Co-Vibrational Modes

I Kolossváry - JACS Au, 2024 - ACS Publications
We propose a new way of utilizing normal modes to study protein conformational transitions.
Instead of considering individual modes independently, we show that a weighted mixture of …

Identification of Orthosteric and Allosteric Pharmacological Chaperones for Mucopolysaccharidosis type IIIB

JC Losada, H Triana, E Venegas, A Caro… - …, 2024 - Wiley Online Library
Mucopolysaccharidosis type IIIB (MPS IIIB) is an autosomal inherited disease caused by
mutations in gene encoding the lysosomal enzyme N‐acetyl‐alpha‐glucosaminidase …