Introducing single cell stereo-sequencing technology to transform the plant transcriptome landscape
G Bawa, Z Liu, X Yu, LSP Tran, X Sun - Trends in Plant Science, 2024 - cell.com
Single cell RNA-sequencing (scRNA-seq) advancements have helped detect transcriptional
heterogeneities in biological samples. However, scRNA-seq cannot currently provide high …
heterogeneities in biological samples. However, scRNA-seq cannot currently provide high …
Inferring super-resolution tissue architecture by integrating spatial transcriptomics with histology
Spatial transcriptomics (ST) has demonstrated enormous potential for generating intricate
molecular maps of cells within tissues. Here we present iStar, a method based on …
molecular maps of cells within tissues. Here we present iStar, a method based on …
STOmicsDB: a comprehensive database for spatial transcriptomics data sharing, analysis and visualization
Recent technological developments in spatial transcriptomics allow researchers to measure
gene expression of cells and their spatial locations at the single-cell level, generating …
gene expression of cells and their spatial locations at the single-cell level, generating …
Dissecting and visualizing the functional diversity of cardiac macrophages
M Holt, J Lin, M Cicka, A Wong, S Epelman… - Circulation …, 2024 - Am Heart Assoc
Cardiac macrophages represent a functionally diverse population of cells involved in
cardiac homeostasis, repair, and remodeling. With recent advancements in single-cell …
cardiac homeostasis, repair, and remodeling. With recent advancements in single-cell …
CROST: a comprehensive repository of spatial transcriptomics
The development of spatial transcriptome sequencing technology has revolutionized our
comprehension of complex tissues and propelled life and health sciences into an era of …
comprehension of complex tissues and propelled life and health sciences into an era of …
KCTD1/KCTD15 complexes control ectodermal and neural crest cell functions, and their impairment causes aplasia cutis
JR Raymundo, H Zhang, G Smaldone… - The Journal of …, 2024 - Am Soc Clin Investig
Aplasia cutis congenita (ACC) is a congenital epidermal defect of the midline scalp and has
been proposed to be due to a primary keratinocyte abnormality. Why it forms mainly at this …
been proposed to be due to a primary keratinocyte abnormality. Why it forms mainly at this …
Spatially organized cellular communities form the developing human heart
The heart, which is the first organ to develop, is highly dependent on its form to function,.
However, how diverse cardiac cell types spatially coordinate to create the complex …
However, how diverse cardiac cell types spatially coordinate to create the complex …
Inferring histology-associated gene expression gradients in spatial transcriptomic studies
J Kueckelhaus, S Frerich, J Kada-Benotmane… - Nature …, 2024 - nature.com
Spatially resolved transcriptomics has revolutionized RNA studies by aligning RNA
abundance with tissue structure, enabling direct comparisons between histology and gene …
abundance with tissue structure, enabling direct comparisons between histology and gene …
Principled and interpretable alignability testing and integration of single-cell data
Single-cell data integration can provide a comprehensive molecular view of cells, and many
algorithms have been developed to remove unwanted technical or biological variations and …
algorithms have been developed to remove unwanted technical or biological variations and …
A data-driven single-cell and spatial transcriptomic map of the human prefrontal cortex
LA Huuki-Myers, A Spangler, NJ Eagles… - Science, 2024 - science.org
The molecular organization of the human neocortex historically has been studied in the
context of its histological layers. However, emerging spatial transcriptomic technologies …
context of its histological layers. However, emerging spatial transcriptomic technologies …