Beyond the standard GWAS-a guide for plant biologists

P Clauw, TJ Ellis, HJ Liu, E Sasaki - Plant And Cell Physiology, 2024 - academic.oup.com
Classic genome-wide association studies (GWAS) look for associations between individual
SNPs and phenotypes of interest. With the rapid progress of high-throughput genotyping …

A genomic basis of vocal rhythm in birds

M Sebastianelli, SM Lukhele, S Secomandi… - Nature …, 2024 - nature.com
Vocal rhythm plays a fundamental role in sexual selection and species recognition in birds,
but little is known of its genetic basis due to the confounding effect of vocal learning in model …

Association analysis provides insights into plant mitonuclear interactions

Q Lian, S Li, S Kan, X Liao, S Huang… - … Biology and Evolution, 2024 - academic.oup.com
Cytonuclear interaction refers to the complex and ongoing process of coevolution between
nuclear and organelle genomes, which are responsible for cellular respiration …

[HTML][HTML] Impacts of parental genomic divergence in non-syntenic regions on cotton heterosis

C Huang, Y Cheng, Y Hu, X Zhang, J Chen… - Journal of Advanced …, 2024 - Elsevier
Introduction Heterosis has revolutionized crop breeding, enhancing global agricultural
production. However, the mechanisms underlying heterosis remain obscure. Xiangzamian …

Evaluation of heritability partitioning approaches in livestock populations

C Yuan, JL Gualdrón Duarte, H Takeda, M Georges… - BMC genomics, 2024 - Springer
Background Heritability partitioning approaches estimate the contribution of different
functional classes, such as coding or regulatory variants, to the genetic variance. This …

MPH: fast REML for large-scale genome partitioning of quantitative genetic variation

J Jiang - Bioinformatics, 2024 - academic.oup.com
Motivation Genome partitioning of quantitative genetic variation is useful for dissecting the
genetic architecture of complex traits. However, existing methods, such as Haseman-Elston …

Genetic architecture of inbreeding depression may explain its persistence in a population of wild red deer

AM Hewett, SE Johnston, A Morris, S Morris… - Molecular …, 2024 - Wiley Online Library
Inbreeding depression is of major concern in declining populations, but relatively little is
known about its genetic architecture in wild populations, such as the degree to which it is …

Genetic variation within a stick-insect species associated with community-level traits

M Sinclair-Waters, LS Zamorano… - Journal of …, 2024 - academic.oup.com
Phenotypic variation within species can affect the ecological dynamics of populations and
communities. Characterizing the genetic variation underlying such effects can help parse the …

Genomic prediction based on preselected single‐nucleotide polymorphisms from genome‐wide association study and imputed whole‐genome sequence data …

Y Zhang, Z Zhuang, Y Liu, J Huang… - Evolutionary …, 2024 - Wiley Online Library
The use of whole‐genome sequence (WGS) data is expected to improve genomic prediction
(GP) power of complex traits because it may contain mutations that in strong linkage …

Novel Alleles from Cicer reticulatum L. for Genetic Improvement of Cultivated Chickpeas Identified through Genome Wide Association Analysis

MW Rahman, AA Deokar, D Lindsay… - International Journal of …, 2024 - mdpi.com
The availability of wild chickpea (Cicer reticulatum L.) accessions has the potential to be
used for the improvement of important traits in cultivated chickpeas. The main objectives of …