[HTML][HTML] Structural dynamics in chromatin unraveling by pioneer transcription factors
A Orsetti, D van Oosten, RG Vasarhelyi… - Biophysical …, 2024 - Springer
Pioneer transcription factors are proteins with a dual function. First, they regulate
transcription by binding to nucleosome-free DNA regulatory elements. Second, they bind to …
transcription by binding to nucleosome-free DNA regulatory elements. Second, they bind to …
Conformational Dynamics of the Nucleosomal Histone H2B Tails Revealed by Molecular Dynamics Simulations
Epigenetic modifications of histone N-terminal tails play a critical role in regulating the
chromatin structure and biological processes such as transcription and DNA repair. One of …
chromatin structure and biological processes such as transcription and DNA repair. One of …
Sequence dependence in nucleosome dynamics
The basic packaging unit of chromatin is the nucleosome, which consists of a 145-147 base
pair DNA wrapped around the histone. The interplay between DNA sequence and …
pair DNA wrapped around the histone. The interplay between DNA sequence and …
Monitoring Anthracycline Cancer Drug‐Nucleosome Interaction by NMR Using a Specific Isotope Labeling Approach for Nucleosomal DNA
CL van Emmerik, V Lobbia, J Neefjes… - …, 2024 - Wiley Online Library
Chromatinized DNA is targeted by proteins and small molecules to regulate chromatin
function. For example, anthracycline cancer drugs evict nucleosomes in a mechanism that is …
function. For example, anthracycline cancer drugs evict nucleosomes in a mechanism that is …
What tunes guanine ionization potential in a nucleosome? An all-in-one systematic QM/MM assessment.
Guanine radical cations are precursors to oxidatively-induced DNA lesions and the
determination of oxidative DNA hot spots beyond oligonucleotides remains a current …
determination of oxidative DNA hot spots beyond oligonucleotides remains a current …
Histone Tetrasome Dynamics Affects Chromatin Transcription
During various DNA-centered processes in the cell nucleus, the minimal structural units of
chromatin organization, nucleosomes, are often transiently converted to hexasomes and …
chromatin organization, nucleosomes, are often transiently converted to hexasomes and …
Development of an Integrated Workflow for Nucleosome Modeling and Simulations
R Sun - 2024 - digitalcommons.latech.edu
Nucleosomes are the building blocks of eukaryotic genomes and thus fundamental to to all
genetic processes. Any protein or drug that binds DNA must either cooperate or compete …
genetic processes. Any protein or drug that binds DNA must either cooperate or compete …
INVESTIGATING THE DOWNSTREAM REACTIONS AND EFFECTS OF DNA METHYLATION AND ONE ELECTRON OXIDATION IN NUCLEOSOME CORE …
T Wen - 2024 - jscholarship.library.jhu.edu
DNA damage caused by alkylation and oxidation is harmful to cells, potentially leading to
cell death or cancer. Alkylating drugs and radiotherapy exploit this cytotoxicity to kill tumor …
cell death or cancer. Alkylating drugs and radiotherapy exploit this cytotoxicity to kill tumor …