[HTML][HTML] Shifts in evolutionary lability underlie independent gains and losses of root-nodule symbiosis in a single clade of plants

HR Kates, BC O'Meara, R LaFrance, GW Stull… - Nature …, 2024 - nature.com
Root nodule symbiosis (RNS) is a complex trait that enables plants to access atmospheric
nitrogen converted into usable forms through a mutualistic relationship with soil bacteria …

[HTML][HTML] Phylogenomics and morphology of Celmisiinae (Asteraceae: Astereae): Taxonomic and evolutionary implications

DA Nicol, P Saldivia, TC Summerfield, M Heads… - Molecular Phylogenetics …, 2024 - Elsevier
Abstract The tribe Astereae (Asteraceae) includes 36 subtribes and 252 genera, and is
distributed worldwide in temperate and tropical regions. One of the subtribes, Celmisiinae …

[HTML][HTML] Plastid phylogenomics and cytonuclear discordance in Rubioideae, Rubiaceae

O Thureborn, N Wikström, SG Razafimandimbison… - Plos one, 2024 - journals.plos.org
In this study of evolutionary relationships in the subfamily Rubioideae (Rubiaceae), we take
advantage of the off-target proportion of reads generated via previous target capture …

A roadmap of phylogenomic methods for studying polyploid plant genera

W Ning, HM Meudt, JA Tate - Applications in Plant Sciences, 2024 - Wiley Online Library
Phylogenetic inference of polyploid species is the first step towards understanding their
patterns of diversification. In this paper, we review the challenges and limitations of inferring …

[HTML][HTML] Plastid phylogenomics and fossil evidence provide new insights into the evolutionary complexity of the 'woody clade'in Saxifragales

L Jia, S Wang, J Hu, K Miao, Y Huang, Y Ji - BMC Plant Biology, 2024 - Springer
Background The “woody clade” in Saxifragales (WCS), encompassing four woody families
(Altingiaceae, Cercidiphyllaceae, Daphniphyllaceae, and Hamamelidaceae), is a …

GeneMiner: A tool for extracting phylogenetic markers from next‐generation sequencing data

P Xie, Y Guo, Y Teng, W Zhou… - Molecular Ecology …, 2024 - Wiley Online Library
The advancement of next‐generation sequencing (NGS) technologies has been
revolutionary for the field of evolutionary biology. This technology has led to an abundance …

Abundant incongruence in a clade endemic to a biodiversity hotspot: Phylogenetics of the scrub mint clade (Lamiaceae)

AA Naranjo, CE Edwards, MA Gitzendanner… - Molecular Phylogenetics …, 2024 - Elsevier
Abstract The Scrub Mint clade (Lamiaceae) provides a unique system for investigating the
evolutionary processes driving diversification in the North American Coastal Plain from both …

[HTML][HTML] Skmer approach improves species discrimination in taxonomically problematic genus Schima (Theaceae)

HN Duan, YZ Jiang, JB Yang, J Cai, JL Zhao, L Li… - Plant Diversity, 2024 - Elsevier
Genome skimming has dramatically extended DNA barcoding from short DNA fragments to
next generation barcodes in plants. However, conserved DNA barcoding markers, including …

Potential use of low-copy nuclear gene Xdh at lower taxonomic levels based on phylogenetic analysis of the nominal section of Dendrobium

A Burzacka-Hinz, M Dudek… - Acta Societatis …, 2024 - repozytorium.bg.ug.edu.pl
Dendrobium is a large group of Orchidaceae, counting more than 1,100 species, whose
classification, both within the genus and individual sections, is not straightforward. erefore …

Molecular phylogeny of Enkianthus Lour.(Ericaceae) based on chloroplast and nuclear DNA sequences with an emphasis on the origin of polyploid species

C Zhou, H Liang, W Hu, Y Yang, X Tian, C Tsutsumi… - Scientia …, 2024 - Elsevier
Enkianthus is a small genus of Ericaceae mostly in east Asia, most constituent species with
important ornamental and ecological values. Due to limited sampling of Chinese species …