[HTML][HTML] A pipeline for the development and analysis of extracellular vesicle-based transcriptomic biomarkers in molecular diagnostics

C Grätz, M Schuster, F Brandes, AS Meidert… - Molecular Aspects of …, 2024 - Elsevier
Extracellular vesicles are shed by every cell type and can be found in any biofluid. They
contain different molecules that can be utilized as biomarkers, including several RNA …

Efficient enrichment of free target sequences in an integrated microfluidic device for point-of-care detection systems

E Erice, O Mitxelena-Iribarren, S Arana… - … , Biology and Medicine, 2024 - Elsevier
Nucleic acid biomarker detection has great importance in the diagnosis of disease, the
monitoring of disease progression and the classification of patients according to treatment …

High-Throughput DNA melt measurements enable improved models of DNA folding thermodynamics

Y Ke, E Sharma, HK Wayment-Steele, WR Becker… - BioRxiv, 2024 - biorxiv.org
DNA folding thermodynamics are central to many biological processes and biotechnological
applications involving base-pairing. Current methods for predicting stability from DNA …

Nearest-neighbour parametrization of DNA single, double and triple mismatches at low sodium concentration

E de Oliveira Martins, G Weber - Biophysical Chemistry, 2024 - Elsevier
DNA mismatches, that is, base pairs different from the canonical AT and CG, are involved in
numerous biological processes and can be a problem for technological applications such as …

Improved melting temperature predictions for single LNA modifications in synthetic DNA oligonucleotides

I Ferreira, P Miranda, K Astakhova, G Weber - Chemical Physics, 2024 - Elsevier
Locked nucleic acids (LNA) is a modification to DNA that generally increases the melting
temperature in double strands. The nearest-neighbour (NN) provides one of the best …

In situ therapeutic response imaging using a novel fluorescence imaging platform: TRIPODD

NP McMahon, AK Solanki, LG Wang… - … , and Analysis of …, 2024 - spiedigitallibrary.org
Successful cancer treatment continues to elude modern medicine and its arsenal of
therapeutic strategies. Therapy resistance is driven by tumor heterogeneity, complex …

INVESTIGATING THE EFFECTS OF ENVIRONMENTAL CONDITIONS ON PIM1 DNA STRUCTURES AND THE DOXORUBICIN BINDING

S OROUJI - 2024 - open.metu.edu.tr
Triple negative breast cancer (TNBC), which lacks the ER, PR and HER-2 expressions is
accounted for the 25% of all breast cancer related deaths in 2019. PIM1 oncogenes were …

Advances in the Development of Photonic Crystal Hydrogels as Versatile Biomolecular Sensors

S Goda - 2024 - d-scholarship.pitt.edu
We expanded the understandings of photonic crystal hydrogel fabrication and swelling
behavior pertaining to their use as sensing materials. Our hydrogels are comprised of a …

[PDF][PDF] Computation of melting temperature of nucleic acid duplexes with rmelting

J Aravind, GK Krishna - 2024 - s3.jcloud.sjtu.edu.cn
The R package rmelting is an interface to the MELTING 5 program (Le Novère, 2001;
Dumousseau et al., 2012) to compute melting temperatures of nucleic acid duplexes …