Towards a general-purpose foundation model for computational pathology

RJ Chen, T Ding, MY Lu, DFK Williamson, G Jaume… - Nature Medicine, 2024 - nature.com
Quantitative evaluation of tissue images is crucial for computational pathology (CPath) tasks,
requiring the objective characterization of histopathological entities from whole-slide images …

Recent advances and evolving concepts in Still's disease

P Ruscitti, L Cantarini, PA Nigrovic… - Nature Reviews …, 2024 - nature.com
Still's disease is a rare inflammatory syndrome that encompasses systemic juvenile
idiopathic arthritis and adult-onset Still's disease, both of which can exhibit life-threatening …

A compendium of genetic regulatory effects across pig tissues

J Teng, Y Gao, H Yin, Z Bai, S Liu, H Zeng… - Nature …, 2024 - nature.com
Abstract The Farm Animal Genotype-Tissue Expression (FarmGTEx) project has been
established to develop a public resource of genetic regulatory variants in livestock, which is …

Smoking changes adaptive immunity with persistent effects

V Saint-André, B Charbit, A Biton, V Rouilly… - Nature, 2024 - nature.com
Individuals differ widely in their immune responses, with age, sex and genetic factors having
major roles in this inherent variability,,,,–. However, the variables that drive such differences …

Nucleosides are overlooked fuels in central carbon metabolism

A Strefeler, J Blanco-Fernandez, AA Jourdain - Trends in Endocrinology & …, 2024 - cell.com
From our daily nutrition and synthesis within cells, nucleosides enter the bloodstream and
circulate throughout the body and tissues. Nucleosides and nucleotides are classically …

Bayesian estimation of gene constraint from an evolutionary model with gene features

T Zeng, JP Spence, H Mostafavi, JK Pritchard - Nature Genetics, 2024 - nature.com
Measures of selective constraint on genes have been used for many applications, including
clinical interpretation of rare coding variants, disease gene discovery and studies of genome …

[HTML][HTML] Understanding the genetic complexity of puberty timing across the allele frequency spectrum

KA Kentistou, LR Kaisinger, S Stankovic, M Vaudel… - Nature …, 2024 - nature.com
Pubertal timing varies considerably and is associated with later health outcomes. We
performed multi-ancestry genetic analyses on~ 800,000 women, identifying 1,080 signals for …

Integrating leiomyoma genetics, epigenomics, and single-cell transcriptomics reveals causal genetic variants, genes, and cell types

K Buyukcelebi, AJ Duval, F Abdula, H Elkafas… - Nature …, 2024 - nature.com
Uterine fibroids (UF), that can disrupt normal uterine function and cause significant physical
and psychological health problems, are observed in nearly 70% of women of reproductive …

Translation variation across genetic backgrounds reveals a post-transcriptional buffering signature in yeast

EM Teyssonniere, Y Shichino, M Mito… - Nucleic Acids …, 2024 - academic.oup.com
Gene expression is known to vary among individuals, and this variability can impact the
phenotypic diversity observed in natural populations. While the transcriptome and proteome …

Genetic imputation of kidney transcriptome, proteome and multi-omics illuminates new blood pressure and hypertension targets

X Xu, C Khunsriraksakul, JM Eales, S Rubin… - Nature …, 2024 - nature.com
Genetic mechanisms of blood pressure (BP) regulation remain poorly defined. Using kidney-
specific epigenomic annotations and 3D genome information we generated and validated …