A pile of pipelines: An overview of the bioinformatics software for metabarcoding data analyses

A Hakimzadeh, A Abdala Asbun… - Molecular Ecology …, 2024 - Wiley Online Library
Environmental DNA (eDNA) metabarcoding has gained growing attention as a strategy for
monitoring biodiversity in ecology. However, taxa identifications produced through …

Ectomycorrhizal fungi are more sensitive to high soil nitrogen levels in forests exposed to nitrogen deposition

K Jörgensen, KE Clemmensen, H Wallander… - New …, 2024 - Wiley Online Library
Ectomycorrhizal fungi are essential for nitrogen (N) cycling in many temperate forests and
responsive to anthropogenic N addition, which generally decreases host carbon (C) …

Plant–soil feedbacks among boreal forest species

D Štraus, MÁ Redondo, C Castaño… - Journal of …, 2024 - Wiley Online Library
Plant–microbial interactions in soils are considered to play a central role in regulating
biodiversity in many global ecosystems. However, studies on plant–soil feedbacks (PSFs) …

[HTML][HTML] Community assembly processes of deadwood mycobiome in a tropical forest revealed by long-read third-generation sequencing

W Purahong, L Ji, YT Wu - Microbial Ecology, 2024 - Springer
Despite the importance of wood-inhabiting fungi on nutrient cycling and ecosystem
functions, their ecology, especially related to their community assembly, is still highly …

Primer pairs, PCR conditions, and peptide nucleic acid clamps affect fungal diversity assessment from plant root tissues

C Viotti, M Chalot, PG Kennedy, F Maillard, S Santoni… - Mycology, 2024 - Taylor & Francis
High-throughput sequencing has become a prominent tool to assess plant-associated
microbial diversity. Still, some technical challenges remain in characterising these …

[HTML][HTML] From genes to toxins: Profiling Prymnesium parvum during a riverine harmful algal bloom

D Mora, M Schlüsener, H Fischer, J Kleinteich… - Harmful Algae, 2024 - Elsevier
Blooms of Prymnesium parvum, a unicellular alga globally distributed in marine and
brackish environments, frequently result in massive fish kills due to the production of toxins …

[HTML][HTML] Spatially-explicit effects of small-scale clear-cutting on soil fungal communities in Pinus sylvestris stands

G Centenaro, S de-Miguel, JA Bonet, FM Peña… - Science of the Total …, 2024 - Elsevier
Clear-cutting is a common silvicultural practice. Although temporal changes in the soil fungal
community after clear-cutting have been widely investigated, little is known about stand-level …

[HTML][HTML] Plant genotype and inoculation with indigenous arbuscular mycorrhizal (AM) fungi modulate wheat productivity and quality of processed products through …

V Marrassini, L Ercoli, G Piazza, E Pellegrino - Field Crops Research, 2024 - Elsevier
Context Arbuscular mycorrhizal fungi (AMF) have been extensively applied as biofertilizers
in wheat to promote crop productivity. However, variability in AM root colonization, grain …

[HTML][HTML] The balance between accumulation and loss of soil organic matter in subarctic forest is related to ratios of saprotrophic, ecto-and ericoid mycorrhizal fungal …

KE Clemmensen, A Michelsen, RD Finlay, BD Lindahl - Fungal Ecology, 2024 - Elsevier
Free-living saprotrophic fungi and symbiotic mycorrhizal fungi affect organic matter
dynamics differently because of contrasting ecological adaptations. We investigated how …

Contrasting fungal functional groups influence nutrient cycling across four Japanese cool-temperate forest soils

F Seidel, C Castaño, JG Alday, JA Bonet - Applied Soil Ecology, 2024 - Elsevier
Understanding soil dynamics and nutrient cycling is crucial for the sustainable management
of Japanese forests covering 70% of the national land area. These forests are dominated by …