A pile of pipelines: An overview of the bioinformatics software for metabarcoding data analyses
A Hakimzadeh, A Abdala Asbun… - Molecular Ecology …, 2024 - Wiley Online Library
Environmental DNA (eDNA) metabarcoding has gained growing attention as a strategy for
monitoring biodiversity in ecology. However, taxa identifications produced through …
monitoring biodiversity in ecology. However, taxa identifications produced through …
Ectomycorrhizal fungi are more sensitive to high soil nitrogen levels in forests exposed to nitrogen deposition
Ectomycorrhizal fungi are essential for nitrogen (N) cycling in many temperate forests and
responsive to anthropogenic N addition, which generally decreases host carbon (C) …
responsive to anthropogenic N addition, which generally decreases host carbon (C) …
Plant–soil feedbacks among boreal forest species
D Štraus, MÁ Redondo, C Castaño… - Journal of …, 2024 - Wiley Online Library
Plant–microbial interactions in soils are considered to play a central role in regulating
biodiversity in many global ecosystems. However, studies on plant–soil feedbacks (PSFs) …
biodiversity in many global ecosystems. However, studies on plant–soil feedbacks (PSFs) …
[HTML][HTML] Community assembly processes of deadwood mycobiome in a tropical forest revealed by long-read third-generation sequencing
W Purahong, L Ji, YT Wu - Microbial Ecology, 2024 - Springer
Despite the importance of wood-inhabiting fungi on nutrient cycling and ecosystem
functions, their ecology, especially related to their community assembly, is still highly …
functions, their ecology, especially related to their community assembly, is still highly …
Primer pairs, PCR conditions, and peptide nucleic acid clamps affect fungal diversity assessment from plant root tissues
High-throughput sequencing has become a prominent tool to assess plant-associated
microbial diversity. Still, some technical challenges remain in characterising these …
microbial diversity. Still, some technical challenges remain in characterising these …
[HTML][HTML] From genes to toxins: Profiling Prymnesium parvum during a riverine harmful algal bloom
D Mora, M Schlüsener, H Fischer, J Kleinteich… - Harmful Algae, 2024 - Elsevier
Blooms of Prymnesium parvum, a unicellular alga globally distributed in marine and
brackish environments, frequently result in massive fish kills due to the production of toxins …
brackish environments, frequently result in massive fish kills due to the production of toxins …
[HTML][HTML] Spatially-explicit effects of small-scale clear-cutting on soil fungal communities in Pinus sylvestris stands
Clear-cutting is a common silvicultural practice. Although temporal changes in the soil fungal
community after clear-cutting have been widely investigated, little is known about stand-level …
community after clear-cutting have been widely investigated, little is known about stand-level …
[HTML][HTML] Plant genotype and inoculation with indigenous arbuscular mycorrhizal (AM) fungi modulate wheat productivity and quality of processed products through …
Context Arbuscular mycorrhizal fungi (AMF) have been extensively applied as biofertilizers
in wheat to promote crop productivity. However, variability in AM root colonization, grain …
in wheat to promote crop productivity. However, variability in AM root colonization, grain …
[HTML][HTML] The balance between accumulation and loss of soil organic matter in subarctic forest is related to ratios of saprotrophic, ecto-and ericoid mycorrhizal fungal …
Free-living saprotrophic fungi and symbiotic mycorrhizal fungi affect organic matter
dynamics differently because of contrasting ecological adaptations. We investigated how …
dynamics differently because of contrasting ecological adaptations. We investigated how …
Contrasting fungal functional groups influence nutrient cycling across four Japanese cool-temperate forest soils
Understanding soil dynamics and nutrient cycling is crucial for the sustainable management
of Japanese forests covering 70% of the national land area. These forests are dominated by …
of Japanese forests covering 70% of the national land area. These forests are dominated by …