Flexible genomic island conservation across freshwater and marine Methylophilaceae

P Layoun, M López-Pérez, JM Haro-Moreno… - The ISME …, 2024 - academic.oup.com
The evolutionary trajectory of Methylophilaceae includes habitat transitions from freshwater
sediments to freshwater and marine pelagial that resulted in genome reduction (genome …

Wekemo Bioincloud: A user‐friendly platform for meta‐omics data analyses

Y Gao, G Zhang, S Jiang, YX Liu - iMeta, 2024 - Wiley Online Library
The increasing application of meta‐omics approaches to investigate the structure, function,
and intercellular interactions of microbial communities has led to a surge in available data …

Exploring potential polysaccharide utilization loci involved in the degradation of typical marine seaweed polysaccharides by Bacteroides thetaiotaomicron

B Yu, Z Lu, S Zhong, KL Cheong - Frontiers in Microbiology, 2024 - frontiersin.org
Introduction Research on the mechanism of marine polysaccharide utilization by
Bacteroides thetaiotaomicron has drawn substantial attention in recent years. Derived from …

Recovering high-quality bacterial genomes from cross-contaminated cultures: a case study of marine Vibrio campbellii

N Orel, E Fadeev, GJ Herndl, V Turk, T Tinta - BMC genomics, 2024 - Springer
Background Environmental monitoring of bacterial pathogens is critical for disease control in
coastal marine ecosystems to maintain animal welfare and ecosystem function and to …

PhyloString: A web server designed to identify, visualize, and evaluate functional relationships between orthologous protein groups across different phylogenetic …

C Dorantes-Torres, M Carrera-Reyna, W Santos… - Plos one, 2024 - journals.plos.org
Proteins are biological units whose essence is defined by their functional relationships with
other proteins or biomolecules such as RNA, DNA, lipids, or carbohydrates. These functions …

Hypoxia in the Blue Mussel Mytilus chilensis Induces a Transcriptome Shift Associated with Endoplasmic Reticulum Stress, Metabolism, and Immune Response

M Montúfar-Romero, V Valenzuela-Muñoz… - Genes, 2024 - mdpi.com
The increase in hypoxia events, a result of climate change in coastal and fjord ecosystems,
impacts the health and survival of mussels. These organisms deploy physiological and …

Structural insights into the bifunctional enzyme human FAD synthase

G Leo, P Leone, EA Kachoie, M Tolomeo, M Galluccio… - Structure, 2024 - cell.com
Human flavin adenine dinucleotide synthase (hFADS) is a bifunctional, multi-domain
enzyme that exhibits both flavin mononucleotide adenylyltransferase and pyrophosphatase …

Whole transcriptome RNA sequencing provides novel insights into the molecular dynamics of ovarian development in mud crab, Scylla paramamosain after mating

Y Yu, M Zhang, D Wang, Z Xiang, Z Zhao, W Cui… - … and Physiology Part D …, 2024 - Elsevier
Ovarian development in animals is a complicated biological process, requiring the
simultaneous coordination among various genes and pathways. To understand the dynamic …

[HTML][HTML] Transcriptomic analyses provide new insights into immune response of the Procambarus clarkii intestines to Aeromonas hydrophila challenge

X Liu, DD Bian, JJ Jiang, S Tang, X Lu, DZ Zhang… - Aquaculture …, 2024 - Elsevier
In recent years, the death rate of Procambarus clarkii increased sharply due to pathogenic
bacterial infections, leading to huge economic losses. To determine the immune response of …

Aeromonas salmonicida subsp. Masoucida causes an emerging infectious diseases and immune response in red swamp crayfish (Procambarus clarkii)

Y Yang, T Mao, B Xu, X Zhu, L Zhang, Y Huang… - Aquaculture, 2024 - Elsevier
In this study, the characteristics of a dominant strain wx3 isolated from the tissues of several
sick red swamp crayfish were studied, and the immune response of the red swamp crayfish …