Mind the gap: epigenetic regulation of chromatin accessibility in plants
J Candela-Ferre, B Diego-Martin… - Plant …, 2024 - academic.oup.com
Chromatin plays a crucial role in genome compaction and is fundamental for regulating
multiple nuclear processes. Nucleosomes, the basic building blocks of chromatin, are …
multiple nuclear processes. Nucleosomes, the basic building blocks of chromatin, are …
Nitrogen sensing and regulatory networks: it's about time and space
A plant's response to external and internal nitrogen signals/status relies on sensing and
signaling mechanisms that operate across spatial and temporal dimensions. From a …
signaling mechanisms that operate across spatial and temporal dimensions. From a …
A foundational large language model for edible plant genomes
J Mendoza-Revilla, E Trop, L Gonzalez… - Communications …, 2024 - nature.com
Significant progress has been made in the field of plant genomics, as demonstrated by the
increased use of high-throughput methodologies that enable the characterization of multiple …
increased use of high-throughput methodologies that enable the characterization of multiple …
Genome organization and botanical diversity
AH Paterson, C Queitsch - The Plant Cell, 2024 - academic.oup.com
The rich diversity of angiosperms, both the planet's dominant flora and the cornerstone of
agriculture, is integrally intertwined with a distinctive evolutionary history. Here, we explore …
agriculture, is integrally intertwined with a distinctive evolutionary history. Here, we explore …
Single-cell transcriptomics is revolutionizing the improvement of plant biotechnology research: recent advances and future opportunities
Single-cell approaches are a promising way to obtain high-resolution transcriptomics data
and have the potential to revolutionize the study of plant growth and development. Recent …
and have the potential to revolutionize the study of plant growth and development. Recent …
Application of Single-Cell Assay for Transposase-Accessible Chromatin with High Throughput Sequencing in Plant Science: Advances, Technical Challenges, and …
C Lu, Y Wei, M Abbas, H Agula, E Wang… - International Journal of …, 2024 - mdpi.com
The Single-cell Assay for Transposase-Accessible Chromatin with high throughput
sequencing (scATAC-seq) has gained increasing popularity in recent years, allowing for …
sequencing (scATAC-seq) has gained increasing popularity in recent years, allowing for …
Evolutionary dynamics of chromatin structure and duplicate gene expression in diploid and allopolyploid cotton
Polyploidy is a prominent mechanism of plant speciation and adaptation, yet the mechanistic
understandings of duplicated gene regulation remain elusive. Chromatin structure dynamics …
understandings of duplicated gene regulation remain elusive. Chromatin structure dynamics …
Insights into multilevel spatial regulation within the root stem cell niche
J Pérez-Sancho, L Van den Broeck… - Current Opinion in …, 2024 - Elsevier
All differentiated root cells derive from stem cells spatially organized within the stem cell
niche (SCN), a microenvironment located within the root tip. Here, we compiled recent …
niche (SCN), a microenvironment located within the root tip. Here, we compiled recent …
scifi-ATAC-seq: massive-scale single-cell chromatin accessibility sequencing using combinatorial fluidic indexing
Single-cell ATAC-seq has emerged as a powerful approach for revealing candidate cis-
regulatory elements genome-wide at cell-type resolution. However, current single-cell …
regulatory elements genome-wide at cell-type resolution. However, current single-cell …
Maintenance and dynamic reprogramming of chromatin organization during development
Controlled transcription of genes is critical for cell differentiation and development. Gene
expression regulation therefore involves a multilayered control from nucleosome …
expression regulation therefore involves a multilayered control from nucleosome …