Genome organization and botanical diversity

AH Paterson, C Queitsch - The Plant Cell, 2024 - academic.oup.com
The rich diversity of angiosperms, both the planet's dominant flora and the cornerstone of
agriculture, is integrally intertwined with a distinctive evolutionary history. Here, we explore …

The story of a decade: genomics, functional genomics and molecular breeding in Brassica napus

J Gu, Z Guan, Y Jiao, K Liu, D Hong - Plant Communications, 2024 - cell.com
Rapeseed (Brassica napus L.) is one of the major global sources for edible vegetable oil
and is also utilized in feeding, pioneer crop, sightseeing and industrial purposes. With the …

Large-scale gene expression alterations introduced by structural variation drive morphotype diversification in Brassica oleracea

X Li, Y Wang, C Cai, J Ji, F Han, L Zhang, S Chen… - Nature Genetics, 2024 - nature.com
Brassica oleracea, globally cultivated for its vegetable crops, consists of very diverse
morphotypes, characterized by specialized enlarged organs as harvested products. This …

Genomic evidence for rediploidization and adaptive evolution following the whole-genome triplication

X Feng, Q Chen, W Wu, J Wang, G Li, S Xu… - Nature …, 2024 - nature.com
Abstract Whole-genome duplication (WGD), or polyploidy, events are widespread and
significant in the evolutionary history of angiosperms. However, empirical evidence for …

Phylogenomic profiles of whole-genome duplications in Poaceae and landscape of differential duplicate retention and losses among major Poaceae lineages

T Zhang, W Huang, L Zhang, DZ Li, J Qi… - Nature Communications, 2024 - nature.com
Poaceae members shared a whole-genome duplication called rho. However, little is known
about the evolutionary pattern of the rho-derived duplicates among Poaceae lineages and …

Macroevolutionary dynamics of gene family gain and loss along multicellular eukaryotic lineages

M Domazet-Lošo, T Široki, K Šimičević… - Nature …, 2024 - nature.com
The gain and loss of genes fluctuate over evolutionary time in major eukaryotic clades.
However, the full profile of these macroevolutionary trajectories is still missing. To give a …

Evolution and subfunctionalization of CIPK6 homologous genes in regulating cotton drought resistance

W Sun, L Xia, J Deng, S Sun, D Yue, J You… - Nature …, 2024 - nature.com
The occurrence of whole-genome duplication or polyploidy may promote plant adaptability
to harsh environments. Here, we clarify the evolutionary relationship of eight GhCIPK6 …

Development and utility of SSR markers based on Brassica sp. whole-genome in triangle of U

N Sun, J Chen, Y Wang, I Hussain, N Lei… - Frontiers in Plant …, 2024 - frontiersin.org
Introduction Simple sequence repeats (SSR), also known as microsatellites, are crucial
molecular markers in both animals and plants. Despite extensive previous research on …

T2T reference genome assembly and genome-wide association study reveal the genetic basis of Chinese bayberry fruit quality

S Zhang, Z Yu, L Sun, S Liang, F Xu, S Li… - Horticulture …, 2024 - academic.oup.com
Chinese bayberry (Myrica rubra or Morella rubra; 2n= 16) produces fruit with a distinctive
flavor, high nutritional, and economic value. However, previous versions of the bayberry …

PHGD: An integrative and user‐friendly database for plant hormone‐related genes

S Feng, Z Liu, H Chen, N Li, T Yu, R Zhou, F Nie… - Imeta, 2024 - Wiley Online Library
All A. thaliana hormone‐related genes were manually screened from the literature and the
TAIR database (https://www. arabidopsis. org/index. jsp). Initially, a comprehensive search …