How can genomics help or hinder wildlife conservation?
Genomic data are becoming increasingly affordable and easy to collect, and new tools for
their analysis are appearing rapidly. Conservation biologists are interested in using this …
their analysis are appearing rapidly. Conservation biologists are interested in using this …
Plant pangenomes for crop improvement, biodiversity and evolution
Plant genome sequences catalogue genes and the genetic elements that regulate their
expression. Such inventories further research aims as diverse as mapping the molecular …
expression. Such inventories further research aims as diverse as mapping the molecular …
Scalable, accessible and reproducible reference genome assembly and evaluation in Galaxy
D Larivière, L Abueg, N Brajuka, C Gallardo-Alba… - Nature …, 2024 - nature.com
The Earth BioGenome Project aims to produce reference genomes for all~ 1.8 million known
eukaryotic species over the next decade 1–4. Achieving this goal will require the current …
eukaryotic species over the next decade 1–4. Achieving this goal will require the current …
The genome of the rayed Mediterranean limpet Patella caerulea (Linnaeus, 1758)
G Halstead-Nussloch, SG Signorini… - Genome Biology and …, 2024 - academic.oup.com
Abstract Patella caerulea (Linnaeus, 1758) is a mollusc limpet species of the class
Gastropoda. Endemic to the Mediterranean Sea, it is considered a keystone species due to …
Gastropoda. Endemic to the Mediterranean Sea, it is considered a keystone species due to …
AI-informed conservation genomics
C van Oosterhout - Heredity, 2024 - nature.com
Genomic data and Artificial Intelligence (AI) models will start to play an increasingly
important role in conservation biology. In a recent study, Wilder et al.(2023) analysed …
important role in conservation biology. In a recent study, Wilder et al.(2023) analysed …
Genomic data and ecological niche modeling reveal an unusually slow rate of molecular evolution in the Cretaceous Eupteleaceae
Living fossils are evidence of long-term sustained ecological success. However, whether
living fossils have little molecular changes remains poorly known, particularly in plants …
living fossils have little molecular changes remains poorly known, particularly in plants …
Hound: a novel tool for automated mapping of genotype to phenotype in bacterial genomes assembled de novo
C Reding, N Satapoomin… - Briefings in …, 2024 - academic.oup.com
Increasing evidence suggests that microbial species have a strong within species genetic
heterogeneity. This can be problematic for the analysis of prokaryote genomes, which …
heterogeneity. This can be problematic for the analysis of prokaryote genomes, which …
Genomic tools in biological invasions: current state and future frontiers
Human activities are accelerating rates of biological invasions and climate-driven range
expansions globally, yet we understand little of how genomic processes facilitate the …
expansions globally, yet we understand little of how genomic processes facilitate the …
Reference genome choice and filtering thresholds jointly influence phylogenomic analyses
Molecular phylogenies are a cornerstone of modern comparative biology and are commonly
employed to investigate a range of biological phenomena, such as diversification rates …
employed to investigate a range of biological phenomena, such as diversification rates …
Nucleotide-level distance metrics to quantify alternative splicing implemented in TranD
A Nanni, J Titus-McQuillan, KS Bankole… - Nucleic Acids …, 2024 - academic.oup.com
Advances in affordable transcriptome sequencing combined with better exon and gene
prediction has motivated many to compare transcription across the tree of life. We develop a …
prediction has motivated many to compare transcription across the tree of life. We develop a …