Genomics and conservation: Guidance from training to analyses and applications

LM Schiebelhut, AS Guillaume, A Kuhn… - Molecular Ecology …, 2024 - Wiley Online Library
Environmental change is intensifying the biodiversity crisis and threatening species across
the tree of life. Conservation genomics can help inform conservation actions and slow …

Hypothalamic tanycytes as mediators of maternally programmed seasonal plasticity

VJ Melum, CS de Miera, FAF Markussen… - Current Biology, 2024 - cell.com
In mammals, maternal photoperiodic programming (MPP) provides a means whereby
juvenile development can be matched to forthcoming seasonal environmental conditions. 1 …

An overlooked phenomenon: complex interactions of potential error sources on the quality of bacterial de novo genome assemblies

Z Rádai, A Váradi, P Takács, NA Nagy, N Schmitt… - BMC genomics, 2024 - Springer
Background Parameters adversely affecting the contiguity and accuracy of the assemblies
from Illumina next-generation sequencing (NGS) are well described. However, past studies …

Plasmid-mediated acquisition and chromosomal integration of blaCTX-M-14 in a subclade of Escherichia coli ST131-H30 clade C1

K Komori, K Aoki, S Harada, Y Ishii… - Antimicrobial Agents …, 2024 - journals.asm.org
Escherichia coli ST131 is a multidrug-resistant lineage associated with the global spread of
extended-spectrum β-lactamase-producing organisms. Particularly, ST131 clade C1 is the …

A Haplotype-resolved, Chromosome-scale Genome for Malus domestica Borkh. 'WA 38'

H Zhang, I Ko, A Eaker, S Haney, N Khuu… - G3: Genes …, 2024 - academic.oup.com
Genome sequencing for agriculturally important Rosaceous crops has made rapid progress
both in completeness and annotation quality. Whole genome sequence and annotation …

Lessons from assembling UCEs: A comparison of common methods and the case of Clavinomia (Halictidae)

S Bossert, A Pauly, BN Danforth… - Molecular Ecology …, 2024 - Wiley Online Library
Sequence data assembly is a foundational step in high‐throughput sequencing, with untold
consequences for downstream analyses. Despite this, few studies have interrogated the …

Whole-Genome Sequencing Analyses Reveal the Evolution Mechanisms of Typical Biological Features of Decapterus maruadsi

WJ Deng, QQ Li, HN Shuai, RX Wu, SF Niu, QH Wang… - Animals, 2024 - mdpi.com
Simple Summary In this study, a high-quality chromosomal-level genome of male
Decapterus maruadsi was assembled based on Illumina, PacBio, and Hi-C technology …

Microbiome of seventh-century old Parsurameswara stone monument of India and role of desiccation-tolerant cyanobacterium Lyngbya corticicola on its …

N Parvin, S Mandal, J Rath - Biofouling, 2024 - Taylor & Francis
The Parsurameswara stone monument, built in the seventh century, is one of the oldest
stone monuments in Odisha, India. Metagenomic analysis of the biological crust samples …

Whole-Genome Sequencing Analyses Reveal the Whip-like Tail Formation, Innate Immune Evolution, and DNA Repair Mechanisms of Eupleurogrammus muticus

FY Han, RX Wu, BB Miao, SF Niu, QH Wang, ZB Liang - Animals, 2024 - mdpi.com
Simple Summary We constructed a high-quality genome assembly of Eupleurogrammus
muticus at the chromosomal level using PacBio SMRT, Illumina Nova-Seq, and Hi-C …

Applying nanopore sequencing technology in Paracoccidioides sp.: a high-quality DNA isolation method for next-generation genomic studies

MN Lorenzini Campos, AF Amadio… - Microbial …, 2024 - microbiologyresearch.org
Paracoccidioidomycosis is a severe systemic endemic mycosis caused by Paracoccidioides
spp. which mainly affects individuals in Latin America. Progress in Paracoccidioides …