GLORI for absolute quantification of transcriptome-wide m6A at single-base resolution

W Shen, H Sun, C Liu, Y Yi, Y Hou, Y Xiao, Y Hu… - Nature …, 2024 - nature.com
Abstract N 6-methyladenosine (m 6 A) is the most abundant posttranscriptional chemical
modification in mRNA, involved in regulating various physiological and pathological …

[HTML][HTML] A pairwise cytokine code explains the organism-wide response to sepsis

M Takahama, A Patil, G Richey, D Cipurko… - Nature …, 2024 - nature.com
Sepsis is a systemic response to infection with life-threatening consequences. Our
understanding of the molecular and cellular impact of sepsis across organs remains …

[HTML][HTML] Recommendations for detection, validation, and evaluation of RNA editing events in cardiovascular and neurological/neurodegenerative diseases

K Karagianni, A Bibi, A Madé, S Acharya… - … Therapy-Nucleic Acids, 2024 - cell.com
RNA editing, a common and potentially highly functional form of RNA modification,
encompasses two different RNA modifications, namely adenosine to inosine (A-to-I) and …

[PDF][PDF] SARS-CoV-2 infection causes dopaminergic neuron senescence

L Yang, TW Kim, Y Han, MS Nair, O Harschnitz, J Zhu… - Cell Stem Cell, 2024 - cell.com
COVID-19 patients commonly present with signs of central nervous system and/or peripheral
nervous system dysfunction. Here, we show that midbrain dopamine (DA) neurons derived …

[HTML][HTML] Comparative analysis of single-cell RNA sequencing methods with and without sample multiplexing

Y Xie, H Chen, VR Chellamuthu, AM Lajam… - International Journal of …, 2024 - mdpi.com
Single-cell RNA sequencing (scRNA-seq) has emerged as a powerful technique for
investigating biological heterogeneity at the single-cell level in human systems and model …

Single-cell transcriptome atlas reveals somatic cell embryogenic differentiation features during regeneration

H Guo, L Zhang, H Guo, X Cui, Y Fan, T Li, X Qi… - Plant …, 2024 - academic.oup.com
Understanding somatic cell totipotency remains a challenge facing scientific inquiry today.
Plants display remarkable cell totipotency expression, illustrated by single-cell differentiation …

[HTML][HTML] Correcting PCR amplification errors in unique molecular identifiers to generate accurate numbers of sequencing molecules

J Sun, M Philpott, D Loi, S Li, P Monteagudo-Mesas… - Nature …, 2024 - nature.com
Unique molecular identifiers are random oligonucleotide sequences that remove PCR
amplification biases. However, the impact that PCR associated sequencing errors have on …

[HTML][HTML] Application of Single-Cell Sequencing Technology in Research on Colorectal Cancer

L Zhao, Q Wang, C Yang, Y Ye, Z Shen - Journal of Personalized …, 2024 - mdpi.com
Colorectal cancer (CRC) is the third most prevalent and second most lethal cancer globally,
with gene mutations and tumor metastasis contributing to its poor prognosis. Single-cell …

[HTML][HTML] Digital RNA sequencing using unique molecular identifiers enables ultrasensitive RNA mutation analysis

M Luna Santamaría, D Andersson, TZ Parris… - Communications …, 2024 - nature.com
Mutation analysis is typically performed at the DNA level since most technical approaches
are developed for DNA analysis. However, some applications, like transcriptional …

[HTML][HTML] Advancing skeletal health and disease research with single-cell RNA sequencing

P Lin, YB Gan, J He, SE Lin, JK Xu, L Chang… - Military Medical …, 2024 - Springer
Orthopedic conditions have emerged as global health concerns, impacting approximately
1.7 billion individuals worldwide. However, the limited understanding of the underlying …