RADseq approaches and applications for forest tree genetics

TL Parchman, JP Jahner, KA Uckele… - Tree Genetics & …, 2018 - Springer
As tree species vary extensively in genome size, complexity, and resource development,
reduced representation methods have been increasingly employed for the generation of …

A key metabolic gene for recurrent freshwater colonization and radiation in fishes

A Ishikawa, N Kabeya, K Ikeya, R Kakioka, JN Cech… - Science, 2019 - science.org
Colonization of new ecological niches has triggered large adaptive radiations. Although
some lineages have made use of such opportunities, not all do so. The factors causing this …

Genome sequence and analysis of the Japanese morning glory Ipomoea nil

A Hoshino, V Jayakumar, E Nitasaka, A Toyoda… - Nature …, 2016 - nature.com
Ipomoea is the largest genus in the family Convolvulaceae. Ipomoea nil (Japanese morning
glory) has been utilized as a model plant to study the genetic basis of floricultural traits, with …

Genome editing reveals fitness effects of a gene for sexual dichromatism in Sulawesian fishes

S Ansai, K Mochida, S Fujimoto… - Nature …, 2021 - nature.com
Sexual selection drives rapid phenotypic diversification of mating traits. However, we know
little about the causative genes underlying divergence in sexually selected traits. Here, we …

Domesticating Vigna stipulacea: Chromosome-Level genome assembly reveals VsPSAT1 as a candidate gene decreasing hard-seededness

Y Takahashi, H Sakai, H Ariga, S Teramoto… - Frontiers in Plant …, 2023 - frontiersin.org
To increase food production under the challenges presented by global climate change, the
concept of de novo domestication—utilizing stress-tolerant wild species as new crops—has …

Mutation in the putative ketoacyl-ACP reductase CaKR1 induces loss of pungency in Capsicum

S Koeda, K Sato, H Saito, AJ Nagano, M Yasugi… - Theoretical and applied …, 2019 - Springer
Key message A putative ketoacyl-ACP reductase (CaKR1) that was not previously known to
be associated with pungency of Capsicum was identified from map-based cloning and …

RAD-seq reveals genetic structure of the F2-generation of natural willow hybrids (Salix L.) and a great potential for interspecific introgression

S Gramlich, ND Wagner, E Hörandl - BMC Plant Biology, 2018 - Springer
Background Hybridization of species with porous genomes can eventually lead to
introgression via repeated backcrossing. The potential for introgression between species is …

Conservation genomics of an endangered floodplain dragonfly, Sympetrum pedemontanum elatum (Selys), in Japan

W Higashikawa, M Yoshimura, AJ Nagano… - Conservation Genetics, 2024 - Springer
Except for fish whose migration is barriered by weirs and dams, there have been inadequate
investigation on the population genetic structure of endangered animal species depending …

High-quality genetic mapping with ddRADseq in the non-model tree Quercus rubra

A Konar, O Choudhury, R Bullis, L Fiedler, JM Kruser… - BMC genomics, 2017 - Springer
Background Restriction site associated DNA sequencing (RADseq) has the potential to be a
broadly applicable, low-cost approach for high-quality genetic linkage mapping in forest …

A spinach genome assembly with remarkable completeness, and its use for rapid identification of candidate genes for agronomic traits

H Hirakawa, A Toyoda, T Itoh, Y Suzuki… - DNA …, 2021 - academic.oup.com
Spinach (Spinacia oleracea) is grown as a nutritious leafy vegetable worldwide. To
accelerate spinach breeding efficiency, a high-quality reference genome sequence with …