Rapid Genome Mapping in Nanochannel Arrays for Highly Complete and Accurate De Novo Sequence Assembly of the Complex Aegilops tauschii Genome

AR Hastie, L Dong, A Smith, J Finklestein, ET Lam… - PloS one, 2013 - journals.plos.org
Next-generation sequencing (NGS) technologies have enabled high-throughput and low-
cost generation of sequence data; however, de novo genome assembly remains a great …

Molecular characterization of the CRa gene conferring clubroot resistance in Brassica rapa

H Ueno, E Matsumoto, D Aruga, S Kitagawa… - Plant molecular …, 2012 - Springer
Clubroot disease is one of the major diseases affecting Brassicaceae crops, and a number
of these crops grown commercially, such as Chinese cabbage (Brassica rapa L. ssp …

Comprehensive analysis of RNA-seq data reveals the complexity of the transcriptome in Brassica rapa

C Tong, X Wang, J Yu, J Wu, W Li, J Huang, C Dong… - BMC genomics, 2013 - Springer
Abstract Background The species Brassica rapa (2n= 20, AA) is an important vegetable and
oilseed crop, and serves as an excellent model for genomic and evolutionary research in …

Genome-wide comparative analysis of the Brassica rapa gene space reveals genome shrinkage and differential loss of duplicated genes after whole genome …

JH Mun, SJ Kwon, TJ Yang, YJ Seol, M Jin, JA Kim… - Genome biology, 2009 - Springer
Background Brassica rapa is one of the most economically important vegetable crops
worldwide. Owing to its agronomic importance and phylogenetic position, B. rapa provides a …

Genome-wide identification of NBS-encoding resistance genes in Brassica rapa

JH Mun, HJ Yu, S Park, BS Park - Molecular Genetics and Genomics, 2009 - Springer
Abstract Nucleotide-binding site (NBS)-encoding resistance genes are key plant disease-
resistance genes and are abundant in plant genomes, comprising up to 2% of all genes. The …

Karyotype and Identification of All Homoeologous Chromosomes of Allopolyploid Brassica napus and Its Diploid Progenitors

Z Xiong, JC Pires - Genetics, 2011 - academic.oup.com
Investigating recombination of homoeologous chromosomes in allopolyploid species is
central to understanding plant breeding and evolution. However, examining chromosome …

A Brassica rapa Linkage Map of EST-based SNP Markers for Identification of Candidate Genes Controlling Flowering Time and Leaf Morphological Traits

F Li, H Kitashiba, K Inaba, T Nishio - DNA research, 2009 - academic.oup.com
For identification of genes responsible for varietal differences in flowering time and leaf
morphological traits, we constructed a linkage map of Brassica rapa DNA markers including …

Fine mapping of the clubroot resistance gene CRb and development of a useful selectable marker in Brassica rapa

T Kato, K Hatakeyama, N Fukino, S Matsumoto - Breeding science, 2013 - jstage.jst.go.jp
Abstract In Chinese cabbage (Brassica rapa), the clubroot resistance (CR) gene CRb is
effective against Plasmodiophora brassicae isolate No. 14, which is classified as pathotype …

Integrated consensus genetic and physical maps of flax (Linum usitatissimum L.)

S Cloutier, R Ragupathy, E Miranda… - Theoretical and applied …, 2012 - Springer
Three linkage maps of flax (Linum usitatissimum L.) were constructed from populations CDC
Bethune/Macbeth, E1747/Viking and SP2047/UGG5-5 containing between 385 and 469 …

Genome‐wide identification of glucosinolate synthesis genes in Brassica rapa

YX Zang, HU Kim, JA Kim, MH Lim, M Jin… - The FEBS …, 2009 - Wiley Online Library
Glucosinolates play important roles in plant defense against herbivores and microbes, as
well as in human nutrition. Some glucosinolate‐derived isothiocyanate and nitrile …