From pixels to connections: exploring in vitro neuron reconstruction software for network graph generation

C Hoffmann, E Cho, A Zalesky, MA Di Biase - Communications Biology, 2024 - nature.com
Digital reconstruction has been instrumental in deciphering how in vitro neuron architecture
shapes information flow. Emerging approaches reconstruct neural systems as networks with …

HyphaTracker: An ImageJ toolbox for time-resolved analysis of spore germination in filamentous fungi

M Brunk, S Sputh, S Doose, S van de Linde… - Scientific Reports, 2018 - nature.com
The dynamics of early fungal development and its interference with physiological signals
and environmental factors is yet poorly understood. Especially computational analysis tools …

Bile Acids Induce Neurite Outgrowth in Nsc-34 Cells via TGR5 and a Distinct Transcriptional Profile

HD Ackerman, GS Gerhard - Pharmaceuticals, 2023 - mdpi.com
Increasing evidence supports a neuroprotective role for bile acids in major
neurodegenerative disorders. We studied major human bile acids as signaling molecules for …

NeuriTES. Monitoring neurite changes through transfer entropy and semantic segmentation in bright-field time-lapse microscopy

A Mencattini, A Spalloni, P Casti, MC Comes… - Patterns, 2021 - cell.com
One of the most challenging frontiers in biological systems understanding is fluorescent
label-free imaging. We present here the NeuriTES platform that revisits the standard …

Brain-wide shape reconstruction of a traced neuron using the convex image segmentation method

S Li, T Quan, H Zhou, Q Huang, T Guan, Y Chen, C Xu… - Neuroinformatics, 2020 - Springer
Neuronal shape reconstruction is a helpful technique for establishing neuron identity,
inferring neuronal connections, mapping neuronal circuits, and so on. Advances in optical …

Practical guide for preparation, computational reconstruction and analysis of 3D human neuronal networks in control and ischaemic conditions

N Räsänen, V Harju, T Joki, S Narkilahti - Development, 2022 - journals.biologists.com
To obtain commensurate numerical data of neuronal network morphology in vitro, network
analysis needs to follow consistent guidelines. Important factors in successful analysis are …

Terahertz radiation stimulates neurite growth in PC12 derived neurons during development phase: preliminary study

S Romanenko, D Appadoo, N Lawler… - … Waves (IRMMW-THz …, 2020 - ieeexplore.ieee.org
Recently, it was demonstrated that Terahertz (THz) radiation facilitates elongation of tubulin
microtubules and actin microfilaments. The phenomenon could have a dramatic impact on …

Bile acids induce neurite outgrowth in NSC-34 cells via TGR5 and a distinct transcriptional profile

G Gerhard, H Ackerman - 2022 - researchsquare.com
Bile acids have recently emerged as potential neuroprotective agents that may modulate
neurodegeneration. Most studies have focused on the single bile acid tauroursodeoxycholic …

[图书][B] Morphometric Analysis of Axons and Dendrites as a Tool for Assessing Neurotoxicity

RK Morgan, M Schmuck, AC Grodzki, DA Bruun… - 2021 - Springer
Chemical perturbation of the temporal or spatial aspects of axonal or dendritic growth is
associated with neurobehavioral deficits in animal models, and structural changes in axons …

[PDF][PDF] Morphologische und transkriptomische Analyse neuronaler Zellen basierend auf Verfahren der Bildverarbeitung und Sequenzanalyse

D Misiak - 2019 - opendata.uni-halle.de
Ich möchte mich zudem bei Prof. Dr. Stefan Hüttelmaier und Prof. Dr. Stefan Posch für die
Betreuung und die Möglichkeit dieses Forschungsthema zu bearbeiten bedanken. Weiterhin …