Aminoacyl-tRNA synthetases

MAR Gomez, M Ibba - Rna, 2020 - rnajournal.cshlp.org
The aminoacyl-tRNA synthetases are an essential and universally distributed family of
enzymes that plays a critical role in protein synthesis, pairing tRNAs with their cognate …

Recent functional insights into the role of (p) ppGpp in bacterial physiology

V Hauryliuk, GC Atkinson, KS Murakami… - Nature Reviews …, 2015 - nature.com
The alarmones guanosine tetraphosphate and guanosine pentaphosphate (collectively
referred to as (p) ppGpp) are involved in regulating growth and several different stress …

[HTML][HTML] Molecular basis of stationary phase survival and applications

J Jaishankar, P Srivastava - Frontiers in microbiology, 2017 - frontiersin.org
Stationary phase is the stage when growth ceases but cells remain metabolically active.
Several physical and molecular changes take place during this stage that makes them …

Coordination of microbial metabolism

V Chubukov, L Gerosa, K Kochanowski… - Nature Reviews …, 2014 - nature.com
Beyond fuelling cellular activities with building blocks and energy, metabolism also
integrates environmental conditions into intracellular signals. The underlying regulatory …

Genome-wide effects on Escherichia coli transcription from ppGpp binding to its two sites on RNA polymerase

P Sanchez-Vazquez, CN Dewey… - Proceedings of the …, 2019 - National Acad Sciences
The second messenger nucleotide ppGpp dramatically alters gene expression in bacteria to
adjust cellular metabolism to nutrient availability. ppGpp binds to two sites on RNA …

Transcriptional responses to ppGpp and DksA

RL Gourse, AY Chen, S Gopalkrishnan… - Annual review of …, 2018 - annualreviews.org
The stringent response to nutrient deprivation is a stress response found throughout the
bacterial domain of life. Although first described in proteobacteria for matching ribosome …

EcoCyc: fusing model organism databases with systems biology

IM Keseler, A Mackie, M Peralta-Gil… - Nucleic acids …, 2013 - academic.oup.com
Abstract EcoCyc (http://EcoCyc. org) is a model organism database built on the genome
sequence of Escherichia coli K-12 MG1655. Expert manual curation of the functions of …

RETRACTED:(p) ppGpp controls bacterial persistence by stochastic induction of toxin-antitoxin activity

E Maisonneuve, M Castro-Camargo, K Gerdes - Cell, 2013 - cell.com
Persistence refers to the phenomenon in which isogenic populations of antibiotic-sensitive
bacteria produce rare cells that transiently become multidrug tolerant. Whether slow growth …

(p) ppGpp: still magical?

K Potrykus, M Cashel - Annu. Rev. Microbiol., 2008 - annualreviews.org
The fundamental details of how nutritional stress leads to elevating (p) ppGpp are
questionable. By common usage, the meaning of the stringent response has evolved from …

Diversity, versatility and complexity of bacterial gene regulation mechanisms: opportunities and drawbacks for applications in synthetic biology

I Bervoets, D Charlier - FEMS microbiology reviews, 2019 - academic.oup.com
Gene expression occurs in two essential steps: transcription and translation. In bacteria, the
two processes are tightly coupled in time and space, and highly regulated. Tight regulation …