Ribosome assembly coming into focus

S Klinge, JL Woolford Jr - Nature reviews Molecular cell biology, 2019 - nature.com
In the past 25 years, genetic and biochemical analyses of ribosome assembly in yeast have
identified most of the factors that participate in this complex pathway and have generated …

The causes of evolvability and their evolution

JL Payne, A Wagner - Nature Reviews Genetics, 2019 - nature.com
Evolvability is the ability of a biological system to produce phenotypic variation that is both
heritable and adaptive. It has long been the subject of anecdotal observations and …

The causes and consequences of genetic interactions (epistasis)

J Domingo, P Baeza-Centurion… - Annual review of …, 2019 - annualreviews.org
The same mutation can have different effects in different individuals. One important reason
for this is that the outcome of a mutation can depend on the genetic context in which it …

MaveDB: an open-source platform to distribute and interpret data from multiplexed assays of variant effect

D Esposito, J Weile, J Shendure, LM Starita… - Genome biology, 2019 - Springer
Multiplex assays of variant effect (MAVEs), such as deep mutational scans and massively
parallel reporter assays, test thousands of sequence variants in a single experiment. Despite …

Determining protein structures using deep mutagenesis

JM Schmiedel, B Lehner - Nature genetics, 2019 - nature.com
Determining the three-dimensional structures of macromolecules is a major goal of
biological research, because of the close relationship between structure and function; …

Massively parallel assays and quantitative sequence–function relationships

JB Kinney, DM McCandlish - Annual review of genomics and …, 2019 - annualreviews.org
Over the last decade, a rich variety of massively parallel assays have revolutionized our
understanding of how biological sequences encode quantitative molecular phenotypes …

Multiplexed assays of variant effects contribute to a growing genotype–phenotype atlas

J Weile, FP Roth - Human genetics, 2018 - Springer
Given the constantly improving cost and speed of genome sequencing, it is reasonable to
expect that personal genomes will soon be known for many millions of humans. This stands …

Mutation and epistasis in influenza virus evolution

DM Lyons, AS Lauring - Viruses, 2018 - mdpi.com
Influenza remains a persistent public health challenge, because the rapid evolution of
influenza viruses has led to marginal vaccine efficacy, antiviral resistance, and the annual …

An experimental assay of the interactions of amino acids from orthologous sequences shaping a complex fitness landscape

VO Pokusaeva, DR Usmanova, EV Putintseva… - PLoS …, 2019 - journals.plos.org
Characterizing the fitness landscape, a representation of fitness for a large set of genotypes,
is key to understanding how genetic information is interpreted to create functional …

DiMSum: an error model and pipeline for analyzing deep mutational scanning data and diagnosing common experimental pathologies

AJ Faure, JM Schmiedel, P Baeza-Centurion, B Lehner - Genome Biology, 2020 - Springer
Deep mutational scanning (DMS) enables multiplexed measurement of the effects of
thousands of variants of proteins, RNAs, and regulatory elements. Here, we present a …