Ribosome assembly coming into focus
S Klinge, JL Woolford Jr - Nature reviews Molecular cell biology, 2019 - nature.com
In the past 25 years, genetic and biochemical analyses of ribosome assembly in yeast have
identified most of the factors that participate in this complex pathway and have generated …
identified most of the factors that participate in this complex pathway and have generated …
The causes of evolvability and their evolution
Evolvability is the ability of a biological system to produce phenotypic variation that is both
heritable and adaptive. It has long been the subject of anecdotal observations and …
heritable and adaptive. It has long been the subject of anecdotal observations and …
The causes and consequences of genetic interactions (epistasis)
J Domingo, P Baeza-Centurion… - Annual review of …, 2019 - annualreviews.org
The same mutation can have different effects in different individuals. One important reason
for this is that the outcome of a mutation can depend on the genetic context in which it …
for this is that the outcome of a mutation can depend on the genetic context in which it …
MaveDB: an open-source platform to distribute and interpret data from multiplexed assays of variant effect
Multiplex assays of variant effect (MAVEs), such as deep mutational scans and massively
parallel reporter assays, test thousands of sequence variants in a single experiment. Despite …
parallel reporter assays, test thousands of sequence variants in a single experiment. Despite …
Determining protein structures using deep mutagenesis
JM Schmiedel, B Lehner - Nature genetics, 2019 - nature.com
Determining the three-dimensional structures of macromolecules is a major goal of
biological research, because of the close relationship between structure and function; …
biological research, because of the close relationship between structure and function; …
Massively parallel assays and quantitative sequence–function relationships
JB Kinney, DM McCandlish - Annual review of genomics and …, 2019 - annualreviews.org
Over the last decade, a rich variety of massively parallel assays have revolutionized our
understanding of how biological sequences encode quantitative molecular phenotypes …
understanding of how biological sequences encode quantitative molecular phenotypes …
Multiplexed assays of variant effects contribute to a growing genotype–phenotype atlas
Given the constantly improving cost and speed of genome sequencing, it is reasonable to
expect that personal genomes will soon be known for many millions of humans. This stands …
expect that personal genomes will soon be known for many millions of humans. This stands …
Mutation and epistasis in influenza virus evolution
DM Lyons, AS Lauring - Viruses, 2018 - mdpi.com
Influenza remains a persistent public health challenge, because the rapid evolution of
influenza viruses has led to marginal vaccine efficacy, antiviral resistance, and the annual …
influenza viruses has led to marginal vaccine efficacy, antiviral resistance, and the annual …
An experimental assay of the interactions of amino acids from orthologous sequences shaping a complex fitness landscape
VO Pokusaeva, DR Usmanova, EV Putintseva… - PLoS …, 2019 - journals.plos.org
Characterizing the fitness landscape, a representation of fitness for a large set of genotypes,
is key to understanding how genetic information is interpreted to create functional …
is key to understanding how genetic information is interpreted to create functional …
DiMSum: an error model and pipeline for analyzing deep mutational scanning data and diagnosing common experimental pathologies
Deep mutational scanning (DMS) enables multiplexed measurement of the effects of
thousands of variants of proteins, RNAs, and regulatory elements. Here, we present a …
thousands of variants of proteins, RNAs, and regulatory elements. Here, we present a …