SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information
M Biasini, S Bienert, A Waterhouse… - Nucleic acids …, 2014 - academic.oup.com
Protein structure homology modelling has become a routine technique to generate 3D
models for proteins when experimental structures are not available. Fully automated servers …
models for proteins when experimental structures are not available. Fully automated servers …
ChEMBL: a large-scale bioactivity database for drug discovery
Abstract ChEMBL is an Open Data database containing binding, functional and ADMET
information for a large number of drug-like bioactive compounds. These data are manually …
information for a large number of drug-like bioactive compounds. These data are manually …
Predicting the functional impact of protein mutations: application to cancer genomics
As large-scale re-sequencing of genomes reveals many protein mutations, especially in
human cancer tissues, prediction of their likely functional impact becomes important …
human cancer tissues, prediction of their likely functional impact becomes important …
The IntAct molecular interaction database in 2012
IntAct is an open-source, open data molecular interaction database populated by data either
curated from the literature or from direct data depositions. Two levels of curation are now …
curated from the literature or from direct data depositions. Two levels of curation are now …
InterPro in 2011: new developments in the family and domain prediction database
S Hunter, P Jones, A Mitchell, R Apweiler… - Nucleic acids …, 2012 - academic.oup.com
Abstract InterPro (http://www. ebi. ac. uk/interpro/) is a database that integrates diverse
information about protein families, domains and functional sites, and makes it freely …
information about protein families, domains and functional sites, and makes it freely …
eggNOG v3. 0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges
Orthologous relationships form the basis of most comparative genomic and metagenomic
studies and are essential for proper phylogenetic and functional analyses. The third version …
studies and are essential for proper phylogenetic and functional analyses. The third version …
The UniProt-GO annotation database in 2011
EC Dimmer, RP Huntley, Y Alam-Faruque… - Nucleic acids …, 2012 - academic.oup.com
The GO annotation dataset provided by the UniProt Consortium (GOA: http://www. ebi. ac.
uk/GOA) is a comprehensive set of evidenced-based associations between terms from the …
uk/GOA) is a comprehensive set of evidenced-based associations between terms from the …
ModBase, a database of annotated comparative protein structure models and associated resources
U Pieper, BM Webb, GQ Dong… - Nucleic acids …, 2014 - academic.oup.com
Abstract ModBase (http://salilab. org/modbase) is a database of annotated comparative
protein structure models. The models are calculated by ModPipe, an automated modeling …
protein structure models. The models are calculated by ModPipe, an automated modeling …
ConoServer: updated content, knowledge, and discovery tools in the conopeptide database
Abstract ConoServer (http://www. conoserver. org) is a database specializing in the
sequences and structures of conopeptides, which are toxins expressed by marine cone …
sequences and structures of conopeptides, which are toxins expressed by marine cone …
The Protein Model Portal—a comprehensive resource for protein structure and model information
J Haas, S Roth, K Arnold, F Kiefer, T Schmidt… - Database, 2013 - academic.oup.com
Abstract The Protein Model Portal (PMP) has been developed to foster effective use of 3D
molecular models in biomedical research by providing convenient and comprehensive …
molecular models in biomedical research by providing convenient and comprehensive …